Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 63.1
edited by puchades
on 2023/04/26 09:29
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To version 127.1
edited by ingrreit
on 2023/05/09 12:46
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1 -XWiki.puchades
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77 77  
78 78  Easily submit openMINDS-compatible metadata via our [[metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. This form covers all the required metadata for sharing data via EBRAINS. When you're ready to 'Submit', the metadata and all uploaded files will be sent to the Curation team.
79 79  
80 -For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]].
80 +For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]]. We have prepared [[a list of the metadata properties that are required>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] for publishing data on EBRAINS.
81 81  
82 82  
83 83  ==== **4. Write a Data Descriptor ** ====
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125 125  
126 126  === Step by Step - Models ===
127 127  
128 +(% style="color:#e74c3c" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-1rb0hn"/}}
129 +
128 128  [place-holder-process-diagram]
129 129  
130 130  ==== **1. model step 1 ** ====
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141 141  
142 142  === Step by Step - Code ===
143 143  
146 +(% style="color:#e74c3c" %)@Jan/Benni
147 +
144 144  [place-holder-process-diagram]
145 145  
146 146  ==== **1. code step 1 ** ====
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157 157  === Webservices and metadata models ===
158 158  
159 159  (% class="wikigeneratedid" id="HContact...." %)
160 -(% style="color:#e74c3c; font-size:16px" %)Contact....(% style="color:#4a5568; font-size:16px" %)
164 +(% style="color:#e74c3c; font-size:16px" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-np253c"/}}(% style="color:#4a5568; font-size:16px" %)
161 161  
162 162  ----
163 163  
164 164  == **The curation team: meet the curators** ==
165 165  
166 -[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]]
170 +**Located in Norway:**
167 167  
172 +|(% style="width:303px" %)(((
173 +[[image:My project2.jpg||height="209" width="167"]]
174 +
175 +**Archana Golla**
176 +
177 +(% class="small" %)Curation Scientist
178 +Neuroscience (PhD)(%%)
179 +(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
180 +)))|(% style="width:303px" %)(((
181 +[[image:My project.jpg||height="209" width="167"]]
182 +
183 +**Camilla H. Blixhavn**
184 +
185 +(% class="small" %)Curation Scientist,
186 +Phd Student
187 +Neuroscience (M. Sc.)(%%)
188 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
189 +)))|(% style="width:303px" %)(((
190 +[[image:My project (1).jpg||height="209" width="167"]]
191 +
192 +**Ingrid Reiten**
193 +
194 +(% class="small" %)Curation Scientist,
195 +Phd Student
196 +Neuroscience (M. Sc.)(%%)
197 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
198 +)))|(% style="width:303px" %)(((
199 +[[image:My project1.jpg||height="209" width="167"]]
200 +
168 168  **Sophia Pieschnik**
169 -(% class="small" %)Biology (B.Sc.)
170 -Neurocognitive Psychology (M.Sc.)
171 171  
203 +(% class="small" %)Curation Scientist
204 +Neurocognitive Psychology (M. Sc.)(%%)
205 +(% class="small" style="color:#4a5568" %)**Neuroimaging **
206 +)))
207 +
208 +
209 +
210 +**Located in Germany:**
211 +
212 +[[image:My project (2).jpg||height="209" width="167"]]
213 +
214 +**Jan Gündling**
215 +
216 +(% class="small" %)Curation Scientist
217 +Sensors and Cognitive Psychology (M. Sc.)(%%)
218 +(% class="small" style="color:#4a5568" %)**Human-Computer Interaction **
219 +
172 172  ----
173 173  
174 174  == **Information and resources for researchers looking to share data** ==
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179 179  
180 180  === **Improve your research product ** ===
181 181  
230 +(% class="wikigeneratedid" %)
231 +**{{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-fkdv6h"/}}**
232 +
182 182  ==== **Add a tutorial or learning resource to your research product ** ====
183 183  
184 184  ==== (% style="color:#e74c3c" %)- Learning resource [information](%%) ====
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194 194  
195 195  EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services.
196 196  
197 -* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://miosdv.apps-dev.hbp.eu/index.html?bucket=https://data-proxy.ebrains.eu/api/v1/public/buckets/img-e4524e0d-63be-4c59-a611-81bfc4d38902]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
248 +* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
198 198  * Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
199 -* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description]
250 +* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] {{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-62mbgl"/}}
200 200  * Integrate your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
201 201  
202 202  ----
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283 283  
284 284  
285 285  {{putFootnotes/}}
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