Changes for page data-curation-copy

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77 77  
78 78  Easily submit openMINDS-compatible metadata via our [[metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. This form covers all the required metadata for sharing data via EBRAINS. When you're ready to 'Submit', the metadata and all uploaded files will be sent to the Curation team.
79 79  
80 -For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]].
80 +For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]]. We have prepared [[a list of the metadata properties that are required>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] for publishing data on EBRAINS.
81 81  
82 82  
83 83  ==== **4. Write a Data Descriptor ** ====
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99 99  
100 100  ==== **Sharing human data ** ====
101 101  
102 -We must ensure data shared on EBRAINS comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
103 -
104 104  (% class="box floatinginfobox" %)
105 105  (((
106 106  For **Human subject data**, the data must be //either//
107 107  
108 108  - Post-mortem data
109 -
110 110  - Aggregated data
111 -
112 112  - Pseudonymized subject data with a legal basis for sharing (e.g. Informed Consent)
113 113  
114 114  (% class="small" %)//If you have human data that do not classify as any of the above, please get in touch and we will clarify the available options. //
115 115  )))
116 116  
117 -Pseudonymized data is shared via the Human Data Gateway (HDG) due to GDPR regulations. The HDG adds an authentication layer to the data.
113 +We must ensure data shared on EBRAINS comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
118 118  
115 +Post-mortem and aggregated human data can be shared openly. Pseudonymized data is shared via the Human Data Gateway (HDG) due to GDPR regulations. The HDG adds an authentication layer to the data.
116 +
119 119  **Data users** must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored.
120 120  \\**Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG.
121 121  \\The Human Data Gateway (HDG) was introduced in February 2021 and developed across multiple teams in the HBP. The initiative to create the service and the initial design originated from EBRAINS Curation in close collaboration with the Data compliance team and the HBP Data Governance Working Group. HDG is a response to the needs of multiple data providers who are bringing data of human origin to EBRAINS. HDG covers the sharing of a limited range of data of human origin, i.e., data without direct identifiers and with very few indirect identifiers (strongly pseudonymized, de-identified). It is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services.
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125 125  
126 126  === Step by Step - Models ===
127 127  
126 +(% style="color:#e74c3c" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-1rb0hn"/}}
127 +
128 128  [place-holder-process-diagram]
129 129  
130 130  ==== **1. model step 1 ** ====
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141 141  
142 142  === Step by Step - Code ===
143 143  
144 +(% style="color:#e74c3c" %)@Jan/Benni
145 +
144 144  [place-holder-process-diagram]
145 145  
146 146  ==== **1. code step 1 ** ====
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157 157  === Webservices and metadata models ===
158 158  
159 159  (% class="wikigeneratedid" id="HContact...." %)
160 -(% style="color:#e74c3c; font-size:16px" %)Contact....(% style="color:#4a5568; font-size:16px" %)
162 +(% style="color:#e74c3c; font-size:16px" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-np253c"/}}(% style="color:#4a5568; font-size:16px" %)
161 161  
162 162  ----
163 163  
164 164  == **The curation team: meet the curators** ==
165 165  
166 -[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]]
168 +**Located in Norway:**
167 167  
170 +|(% style="width:303px" %)(((
171 +[[image:My project2.jpg||height="209" width="167"]]
172 +
173 +**Archana Golla**
174 +
175 +(% class="small" %)Curation Scientist
176 +Neuroscience (PhD)(%%)
177 +(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
178 +)))|(% style="width:303px" %)(((
179 +[[image:My project.jpg||height="209" width="167"]]
180 +
181 +**Camilla H. Blixhavn**
182 +
183 +(% class="small" %)Curation Scientist,
184 +Phd Student
185 +Neuroscience (M. Sc.)(%%)
186 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
187 +)))|(% style="width:303px" %)(((
188 +[[image:My project (1).jpg||height="209" width="167"]]
189 +
190 +**Ingrid Reiten**
191 +
192 +(% class="small" %)Curation Scientist,
193 +Phd Student
194 +Neuroscience (M. Sc.)(%%)
195 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
196 +)))|(% style="width:303px" %)(((
197 +[[image:My project1.jpg||height="209" width="167"]]
198 +
168 168  **Sophia Pieschnik**
169 -(% class="small" %)Biology (B.Sc.)
170 -Neurocognitive Psychology (M.Sc.)
171 171  
201 +(% class="small" %)Curation Scientist
202 +Neurocognitive Psychology (M. Sc.)(%%)
203 +(% class="small" style="color:#4a5568" %)**Neuroimaging **
204 +)))
205 +
206 +
207 +\\**Located in Germany:**
208 +
209 +[[image:My project (2).jpg||height="209" width="167"]]
210 +
211 +**Jan Gündling**
212 +
213 +(% class="small" %)Curation Scientist
214 +Sensors and Cognitive Psychology (M. Sc.)(%%)
215 +(% class="small" style="color:#4a5568" %)**Human-Computer Interaction **
216 +
172 172  ----
173 173  
174 174  == **Information and resources for researchers looking to share data** ==
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179 179  
180 180  === **Improve your research product ** ===
181 181  
227 +(% class="wikigeneratedid" %)
228 +**{{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-fkdv6h"/}}**
229 +
182 182  ==== **Add a tutorial or learning resource to your research product ** ====
183 183  
184 184  ==== (% style="color:#e74c3c" %)- Learning resource [information](%%) ====
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196 196  
197 197  * Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
198 198  * Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
199 -* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description]
247 +* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] {{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-62mbgl"/}}
200 200  * Integrate your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
201 201  
202 202  ----
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283 283  
284 284  
285 285  {{putFootnotes/}}
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