Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 65.1
edited by spieschnik
on 2023/04/26 11:36
Change comment: There is no comment for this version
To version 55.1
edited by ingrreit
on 2023/04/25 17:28
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1 -XWiki.spieschnik
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32 32  
33 33  Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata.
34 34  
35 -Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].Data and models are linked to and discoverable via the species-specific [[EBRAINS siibra atlas viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].
36 36  
37 -
38 -(% class="box infomessage" %)
36 +(% class="box successmessage" %)
39 39  (((
40 -**We strongly recommend to start preparing for data sharing as early as possible.** With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us for personalised guidance on how to prepare for sharing>>mailto:curation-support@ebrains.eu]]. **
38 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases.
41 41  )))
42 42  
43 -(% class="box successmessage" %)
41 +(% class="box floatinginfobox" %)
44 44  (((
45 -**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases.
43 +**We strongly recommend to start preparing for data sharing as early as possible.** With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us for personalised guidance on how to prepare for sharing>>mailto:curation-support@ebrains.eu]]. **
46 46  )))
47 47  
46 +
47 +
48 +
49 +
50 +=== When you've completed the curation process ===
51 +
52 +Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].
53 +
54 +Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].
55 +
56 +
48 48  ----
49 49  
50 50  === Step by step - Experimental data ===
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154 154  
155 155  ----
156 156  
157 -=== Webservices and metadata models ===
166 +=== Webservices and metadata models ===
158 158  
159 -(% class="wikigeneratedid" id="HContact...." %)
160 -(% style="color:#e74c3c; font-size:16px" %)Contact....(% style="color:#4a5568; font-size:16px" %)
168 +=== (% style="color: rgb(231, 76, 60); font-size: 16px" %)Contact....(% style="color:#4a5568; font-size:16px" %) (%%) ===
161 161  
162 162  ----
163 163  
164 -== **The curation team: meet the curators** ==
172 +=== **The curation team: meet the curators** ===
165 165  
166 166  [[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]]
167 167  
168 168  **Sophia Pieschnik**
177 +(% class="small" %)Biology (B.Sc.)
178 +Neurocognitive Psychology (M.Sc.)
169 169  
170 -**Curation scientist**
171 -(% class="small" %)Neurocognitive Psychology (M.Sc.)
172 -(% class="small" %)Focus area: Neuroimaging
173 -
174 174  ----
175 175  
176 176  == **Information and resources for researchers looking to share data** ==
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179 179  
180 180  ----
181 181  
182 -=== **Improve your research product ** ===
188 +=== **Enrich your dataset, model or software** ===
183 183  
184 -==== **Add a tutorial or learning resource to your research product ** ====
190 +(% style="color:#e74c3c" %)- Workflows [information]
185 185  
186 -==== (% style="color:#e74c3c" %)- Learning resource [information](%%) ====
192 +(% style="color:#e74c3c" %)- Learning resource [information]
187 187  
188 -
189 -==== **Create a workflow for .... ? ** ====
190 -
191 -==== (% style="color:#e74c3c" %)- Workflows [information](%%) ====
192 -
193 193  ----
194 194  
195 -=== **Integrate your data, models or software with other services** ===
196 -
197 -EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services.
198 -
199 -* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
200 -* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
201 -* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description]
202 -* Integrate your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
203 -
204 -----
205 -
206 206  === **The benefits of sharing data ** ===
207 207  
208 208  (% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail.
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233 233  
234 234  ----
235 235  
226 +=== **Integrate your data on EBRAINS with other services** ===
227 +
228 +EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services.
229 +
230 +* Integrate image data with //the Mio viewer//: (% style="color:#e74c3c" %)[description]
231 +* Integrate atlas-registered 2D image data with //the Localizoom viewer//: (% style="color:#e74c3c" %)[description](%%). See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.
232 +* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description]
233 +* Integrate your data to //the atlas viewer Siibra//: (% style="color:#e74c3c" %)[description](%%). To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
234 +
235 +
236 +----
237 +
236 236  === **Common concerns - and answers ** ===
237 237  
238 238  (((