Changes for page data-curation-copy
Last modified by eapapp on 2023/07/04 16:46
From version 66.1
edited by spieschnik
on 2023/04/26 11:36
on 2023/04/26 11:36
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... ... @@ -32,10 +32,12 @@ 32 32 33 33 Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata. 34 34 35 -Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].Data and models are linked to and discoverable via the species-specific [[EBRAINS siibra atlas viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 36 36 36 +Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]]. 37 37 38 -(% class="box infomessage" %) 38 +Data and models are linked to and discoverable via the species-specific [[EBRAINS siibra atlas viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 39 + 40 +(% class="box floatinginfobox" %) 39 39 ((( 40 40 **We strongly recommend to start preparing for data sharing as early as possible.** With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us for personalised guidance on how to prepare for sharing>>mailto:curation-support@ebrains.eu]]. ** 41 41 ))) ... ... @@ -45,6 +45,7 @@ 45 45 **Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. 46 46 ))) 47 47 50 + 48 48 ---- 49 49 50 50 === Step by step - Experimental data === ... ... @@ -166,11 +166,9 @@ 166 166 [[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] 167 167 168 168 **Sophia Pieschnik** 172 +(% class="small" %)Biology (B.Sc.) 173 +Neurocognitive Psychology (M.Sc.) 169 169 170 -Curation scientist 171 -(% class="small" %)Neurocognitive Psychology (M.Sc.) 172 -Focus area: Neuroimaging 173 - 174 174 ---- 175 175 176 176 == **Information and resources for researchers looking to share data** == ... ... @@ -192,14 +192,14 @@ 192 192 193 193 ---- 194 194 195 -=== **Integrate your data ,modelsorsoftware with other services** ===196 +=== **Integrate your data on EBRAINS with other services** === 196 196 197 197 EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services. 198 198 199 -* Integrate image data with //the Mio viewer//: EBRAINSMulti-Image OpenSeadragon viewer providesan intuitive wayof navigating high-resolution 2D imageseries. It has browser-basedclassic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row andcolumns.See[[Mio viewer links available for thisdataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].200 -* Integrate atlas-registered 2D image data with //the Locali Zoom viewer//:TheEBRAINS LocaliZoomserialsection viewer displays seriesofregistered 2D sectionimageswith atlas overlay, allowingthe users to zoomintohigh-resolutionimages and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].200 +* Integrate image data with //the Mio viewer//: (% style="color:#e74c3c" %)[description] 201 +* Integrate atlas-registered 2D image data with //the Localizoom viewer//: (% style="color:#e74c3c" %)[description](%%). See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. 201 201 * Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] 202 -* Integrate your data to //the Siibra//-explorer: The siibra-explorer isused forvisualizing volumetric brain data in all thebrainatlases provided by EBRAINS(Human, Monkey, Rat and Mouse). The siibra-explorervieweruses siibra-apito enablenavigation of brain region hierarchies, maps in different coordinate spaces, andlinked regional data features. Furthermore, it isconnectedwith theiibra toolsuiteproviding several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.203 +* Integrate your data to //the atlas viewer Siibra//: (% style="color:#e74c3c" %)[description](%%). To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu. 203 203 204 204 ---- 205 205