Changes for page data-curation-copy
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on 2023/04/27 10:47
on 2023/04/27 10:47
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... ... @@ -77,7 +77,7 @@ 77 77 78 78 Easily submit openMINDS-compatible metadata via our [[metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. This form covers all the required metadata for sharing data via EBRAINS. When you're ready to 'Submit', the metadata and all uploaded files will be sent to the Curation team. 79 79 80 -For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]]. We have prepared [[a list of the metadata properties that are required>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] for publishing data on EBRAINS.80 +For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]]. 81 81 82 82 83 83 ==== **4. Write a Data Descriptor ** ==== ... ... @@ -163,27 +163,12 @@ 163 163 164 164 == **The curation team: meet the curators** == 165 165 166 - **LocatednNorway:**166 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] 167 167 168 -[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] [[image:ansattfoto2.jpg||height="184" width="137"]] 168 +**Sophia Pieschnik** 169 +(% class="small" %)Biology (B.Sc.) 170 +Neurocognitive Psychology (M.Sc.) 169 169 170 -**Sophia Pieschnik Ingrid Reiten** 171 - 172 -Curation scientist Curation Scientist, Phd Student 173 -(% class="small" %)Neurocognitive Psychology (M.Sc.) 174 -Neuroimaging Neuroanatomy and structural connectivity 175 - 176 - 177 -**Located in Germany:** 178 - 179 -[[image:csm_Jan_Gruendling_3_bf9567ebb1.jpg||height="180" width="180"]] 180 - 181 -**Jan Gündling** 182 - 183 -Curation Scientist 184 -(% class="small" %)Sensors and Cognitive Psychology (M.Sc.) 185 -Human-Computer Interaction 186 - 187 187 ---- 188 188 189 189 == **Information and resources for researchers looking to share data** == ... ... @@ -209,10 +209,10 @@ 209 209 210 210 EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services. 211 211 212 -* Integrate image data with //the Mio viewer//: EBRAINSMulti-Image OpenSeadragon viewer providesan intuitive wayof navigating high-resolution 2D imageseries. It has browser-basedclassic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row andcolumns.See[[Mio viewer links available for thisdataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].213 -* Integrate atlas-registered 2D image data with //the Locali Zoom viewer//:TheEBRAINS LocaliZoomserialsection viewer displays seriesofregistered 2D sectionimageswith atlas overlay, allowingthe users to zoomintohigh-resolutionimages and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].197 +* Integrate image data with //the Mio viewer//: (% style="color:#e74c3c" %)[description] 198 +* Integrate atlas-registered 2D image data with //the Localizoom viewer//: (% style="color:#e74c3c" %)[description](%%). See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. 214 214 * Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] 215 -* Integrate your data to //the Siibra//-explorer: The siibra-explorer isused forvisualizing volumetric brain data in all thebrainatlases provided by EBRAINS(Human, Monkey, Rat and Mouse). The siibra-explorervieweruses siibra-apito enablenavigation of brain region hierarchies, maps in different coordinate spaces, andlinked regional data features. Furthermore, it isconnectedwith theiibra toolsuiteproviding several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.200 +* Integrate your data to //the atlas viewer Siibra//: (% style="color:#e74c3c" %)[description](%%). To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu. 216 216 217 217 ---- 218 218
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