Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 72.1
edited by spieschnik
on 2023/04/27 10:47
Change comment: There is no comment for this version
To version 63.1
edited by puchades
on 2023/04/26 09:29
Change comment: There is no comment for this version

Summary

Details

Page properties
Author
... ... @@ -1,1 +1,1 @@
1 -XWiki.spieschnik
1 +XWiki.puchades
Content
... ... @@ -77,7 +77,7 @@
77 77  
78 78  Easily submit openMINDS-compatible metadata via our [[metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. This form covers all the required metadata for sharing data via EBRAINS. When you're ready to 'Submit', the metadata and all uploaded files will be sent to the Curation team.
79 79  
80 -For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]]. We have prepared [[a list of the metadata properties that are required>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] for publishing data on EBRAINS.
80 +For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]].
81 81  
82 82  
83 83  ==== **4. Write a Data Descriptor ** ====
... ... @@ -163,27 +163,12 @@
163 163  
164 164  == **The curation team: meet the curators** ==
165 165  
166 -**Located in Norway:**
166 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]]
167 167  
168 -[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] [[image:ansattfoto2.jpg||height="184" width="137"]]
168 +**Sophia Pieschnik**
169 +(% class="small" %)Biology (B.Sc.)
170 +Neurocognitive Psychology (M.Sc.)
169 169  
170 -**Sophia Pieschnik  Ingrid Reiten**
171 -
172 -Curation scientist  Curation Scientist, Phd Student
173 -(% class="small" %)Neurocognitive Psychology (M.Sc.) 
174 -Neuroimaging  Neuroanatomy and structural connectivity
175 -
176 -
177 -**Located in Germany:**
178 -
179 -[[image:csm_Jan_Gruendling_3_bf9567ebb1.jpg||height="180" width="180"]]
180 -
181 -**Jan Gündling**
182 -
183 -Curation Scientist
184 -(% class="small" %)Sensors and Cognitive Psychology (M.Sc.)
185 -Human-Computer Interaction
186 -
187 187  ----
188 188  
189 189  == **Information and resources for researchers looking to share data** ==
... ... @@ -209,7 +209,7 @@
209 209  
210 210  EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services.
211 211  
212 -* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
197 +* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://miosdv.apps-dev.hbp.eu/index.html?bucket=https://data-proxy.ebrains.eu/api/v1/public/buckets/img-e4524e0d-63be-4c59-a611-81bfc4d38902]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
213 213  * Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
214 214  * Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description]
215 215  * Integrate your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
ansattfoto2.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -1.8 MB
Content
csm_Jan_Gruendling_3_bf9567ebb1.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -108.6 KB
Content