Changes for page Data Curation
Last modified by abonard on 2025/06/03 10:55
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... ... @@ -17,9 +17,9 @@ 17 17 {{/html}} 18 18 19 19 20 -(% class="wikigeneratedid" id="HPublishingneurosciencedata2CmodelsandsoftwareviaEBRAINS" %) 21 -(% style="font-size:2em" %)**Publishing neuroscience data, models and software via EBRAINS** 20 +== Publishing neuroscience data, models and software via EBRAINS == 22 22 22 + 23 23 (% class="wikigeneratedid" %) 24 24 The aim of this collab is to provide you with detailed information about publishing data, simulations, computational models, and software via EBRAINS. If you want a quick overview of the sharing process, see [[https:~~/~~/ebrains.eu/service/share-data>>https://ebrains.eu/service/share-data]]. 25 25 ... ... @@ -34,10 +34,8 @@ 34 34 Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS. 35 35 36 36 37 -(% class="box" style="text-align: center; font-size: 1.2em" %) 38 -((( 39 -Search existing data, models and software in the [[EBRAINS Knowledge Graph>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]] 40 -))) 37 +(% style="text-align: center;" %) 38 +Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]] 41 41 42 42 43 43 EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below. ... ... @@ -67,9 +67,7 @@ 67 67 68 68 The curation of data, models and software is different. Thus, below we explain the process for sharing for each research product separately. 69 69 70 -**Before you get started, make sure you[[ sign up for a free EBRAINS account>>https://www.ebrains.eu/page/sign-up]]. This is needed to complete the data sharing process. ** 71 71 72 - 73 73 ---- 74 74 75 75 === Step by step - Data === ... ... @@ -84,7 +84,7 @@ 84 84 //with all you need to know// 85 85 //to share data on EBRAINS: // 86 86 // // 87 -[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]] 83 +[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]// 88 88 ))) 89 89 90 90 ... ... @@ -91,38 +91,32 @@ 91 91 ==== **1. Provide some general information about your dataset** ==== 92 92 93 93 90 +[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]]** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. ** 94 94 95 - (%style="margin-right:10px"%)[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;"width="91px;"]](%%)**Fillin the[[EBRAINSCurationRequestForm>>https://nettskjema.no/a/386195]]. **92 +This form collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case. 96 96 97 -The form collects general information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track and follow up on incoming requests. 98 98 99 - You willalsobeasked tofill ininformation relatedtothicsandregulatory compliance,sothat wecanevaluatewhetherwe can ethicallyandlegally sharethedata viaEBRAINS (earlier,thiswasrecordedviaa [[separateform>>https://nettskjema.no/a/224765]]).See below for information about the ethical and legal aspects concerning sharing of human subject data.95 +[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]]**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**. 100 100 97 +This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS. 101 101 102 - ====**2. Uploaddata**====99 +See below for information about the ethical and legal aspects concerning sharing of human subject data. 103 103 104 -(% class="box floatinginfobox" id="share-data-infographic" %) 105 -((( 106 -(% style="text-align:center" %) 107 -//Download our infographic// 108 -//with guidelines 109 -on data organization: // 110 110 111 -(% style="text-align:center" %) 112 -[[[[image:image-20230621121014-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]] 113 -))) 102 +==== **2. Upload data ** ==== 114 114 115 -(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]](%%)**Ensure data is structured consistently prior to upload. ** 116 116 117 - Wek forrganized data,notrganizedaccordingtourstandard. Thisis to supportthebroadestdegreeofaringossible.Wedohowever requirethat thedata isorganizedin aconsistentandprecise manner.Please seeour////[[guidelineson data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] forfurther guidance.105 +[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]]**Ensure data is structured consistently prior to upload. ** 118 118 119 - (%style="margin-right:10px"%)[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;"width="91px;"]](%%)**UploaddatatoEBRAINS Storage,eitherusingag-and-dropsolution(opt.1)orctivepythonscript(opt.2).**107 +We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[collection of guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance. 120 120 121 - **Opt. 1. **For smaller datasetswitha reasonableamountfiles,werecommendng the Collab-Bucketsolution(drag-and-drop).A Collab Bucketmustfirstbeassignedtoadataset, which happenswhena datasets is acceptedforsharing.109 +[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]]**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).** 122 122 123 - **Opt.2.**Forlarger datasetsor datasetswith alarge amount of files, we recommend usinga programmaticapproach. The[[pythonscript>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] isinteractive anddoesnotrequireanyadditionalprogramming.111 +//Opt. 1. //For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing. 124 124 113 +//Opt. 2. //For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming. 125 125 115 + 126 126 EBRAINS offers secure, long-term storage at [[CSCS Swiss National Supercomputing Centre>>url:https://www.cscs.ch/]], with currently no upper limit of storage capacity. 127 127 128 128 If a data collection is already uploaded elsewhere, we may link to the already existing repository. ... ... @@ -131,25 +131,23 @@ 131 131 ==== **3. Submit metadata** ==== 132 132 133 133 134 - (% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]](%%)**Submit metadata using the **[[EBRAINSMetadataWizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or directlyvia the Knowledge Graph (opt. 2) **124 +[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) ** 135 135 136 - **Opt. 1.**Manually submit the minimal required metadata via the [[EBRAINSMetadataWizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically126 +//Opt. 1.// Manually submit the minimal required metadata via the [[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically 137 137 138 - **Opt. 2.**To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via:128 +//Opt. 2.// To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via: 139 139 140 140 * Knowledge Graph Editor: This User Interface allows you to manually enter metadata into your KG space and validate metadata that are programmatically uploaded. The Editor contains a basic set of openMINDS metadata templates, but can be extended to the full openMINDS metadata model on request. Access is granted once the request is accepted. 141 141 * [[Fairgraph>>https://fairgraph.readthedocs.io/en/stable/]]: This is the recommended software tool for programmatic interaction with the KG. It allows you to programmatically upload openMINDS compliant metadata into your KG space and interact with existing metadata. 142 142 * [[KG Core Python SDK>>https://github.com/HumanBrainProject/kg-core-sdks]]: This python package gives you full freedom in interacting with he KG. It allows you to upload any JSON-LD with metadata into your private space. Note, for dataset publications in EBRAINS, the JSON-LD metadata files have to comply to openMINDS. 143 143 144 -Datasets published through the EBRAINS Knowledge Graph have to be registered using **openMINDS compliant metadata** delivered as JSON-LD files. See this summary table for an overview of [[the minimally required openMINDS properties for publishing>>https://drive.ebrains.eu/ f/3e226ad165054b35b456/||rel="noopeneroreferrer"target="_blank"]] on EBRAINS.134 +Datasets published through the EBRAINS Knowledge Graph have to be registered using **openMINDS compliant metadata** delivered as JSON-LD files. See this summary table for an overview of [[the minimally required openMINDS properties for publishing>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] on EBRAINS. 145 145 146 146 147 -==== **4. Write a Data Descriptor** ==== 137 +==== **4. Write a Data Descriptor ** ==== 148 148 139 +[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]]**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]** . ** 149 149 150 - 151 -(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]](%%)**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]**.** 152 - 153 153 The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF. 154 154 155 155 See our infographic about the data descriptor for inspiration or guidance. ... ... @@ -158,206 +158,199 @@ 158 158 159 159 Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor. 160 160 149 +==== [[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]//The EBRAINS Data descriptor at-a-glance// ==== 161 161 162 -(% class="box floatinginfobox" id="data-descriptor-infographic" %) 163 -((( 164 -(% style="text-align:center" %) 165 -//Download our infographic 166 -about the EBRAINS Data// 167 -//Descriptor// 168 -// // 169 -[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]] 170 -))) 171 171 172 -==== **5. Preview and publish** ==== 152 +==== **5. Preview and publish ** ==== 173 173 174 174 175 - (% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]](%%)**Preview and approve the release of your dataset. **155 +[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]]**Preview and approve the release of your dataset. **Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI. 176 176 177 -Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI. 178 178 158 +---- 179 179 160 +==== **Sharing human subject data ** ==== 180 180 162 +(% class="box floatinginfobox" %) 163 +((( 164 +**Human subject data that can be shared on EBRAINS:** 181 181 182 ----- 166 +- Post-mortem data 167 +- Aggregated data 168 +- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent) 183 183 184 -=== Step by Step - Models === 170 +(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. // 171 +))) 185 185 173 +Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]]. 186 186 187 - ====1.Start early====175 +Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG). 188 188 189 - Itis not necessary towaituntilyouare readytopublish to registeryourmodelwithEBRAINS.177 +The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers. 190 190 191 -By registering a model early in your project, you can take advantage of EBRAINS tools 192 -to keep track of simulations and to share them with your collaborators. 179 +The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG. 193 193 194 - ====2.Create/choose aCollabworkspace====181 +The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services. 195 195 196 -We use EBRAINS Collaboratory "collab" workspaces to help manage the model curation process. 197 197 198 - In particular, we use collab membership (the "Team") to control who can view or edit your model metadata prior to publication.184 +---- 199 199 200 -It is up to you whether you create a new collab for each model, or reuse an existing collab 201 -(it is no problem to have multiple models associated with a single collab). 186 +=== Step by Step - Models === 202 202 203 -Collabs are also useful for storing simulation results, adding documentation for your model, 204 -and/or providing tutorials in Jupyter notebooks. 205 205 206 - ====3.Upload code====189 +~1. Request curation using the [[Curation request form>>https://nettskjema.no/a/277393#/]]. You will be contacted by a curator with more information. 207 207 208 -We recommend storing model code and/or configuration files in an online Git repository, for example on GitHub. 209 -This repository should be public when you publish the model, but a private repository can be used for model development. 210 210 211 -A lternatively,you canupload codetothe CollabDriveor Bucketstorage.192 +//Additional information will be added soon.// 212 212 213 - ==== 4.Submit metadata ====194 +---- 214 214 215 - Werecommendsubmittingmetadata using theModelCatalog app, installedin your collab.196 +=== Step by Step - Software === 216 216 217 - Toinstall it:198 +[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]] 218 218 219 -1. click the "+ Create" button 220 -1. in the "Create Page" form, add a title, such as "Model Catalog", and select "Community App", then click "Create" 221 -1. scroll down until you find the "Model Catalog" app, click "Select", then "Save & View" 200 +~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph. 222 222 223 -You will then see a table of all the models and validation tests associated with this collab. 224 -If this is your first time using the app, the table will probably be empty. 225 -To add your model, click "+", fill in the form, then click "Add model". 202 +2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary. 226 226 227 -As development of your model proceeds, you can easily register new versions of the code, 228 -and new parameterizations, by clicking "Add new version". 204 +3. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community. 229 229 230 -If you prefer not to use the app, you can instead fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]., 231 -and you will be contacted by e-mail with further instructions. 206 +If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]]. 232 232 233 - ====5.Provideareference dataset====208 +For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below. 234 234 235 -Once you're ready to publish your model entry in the EBRAINS Knowledge Graph, 236 -we encourage you to provide a dataset containing the simulation results produced by your model, 237 -following the process under "Step by step - Data" above. 210 +(% style="text-align: right;" %) 211 +==== //Software curation at a glance //[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] ==== 238 238 239 -These reference data will be linked to the model, and will be helpful to anyone trying to 240 -reuse your model. 213 +---- 241 241 242 -We will soon introduce a "Reproducible" badge for all models that include a reference dataset, 243 -and whose simulation results can be reproduced by an EBRAINS curator. 215 +== **The openMINDS metadata framework** == 244 244 245 - ====6.Request publication, preview andpublish====217 +openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]]. 246 246 247 -Until you request your model entry to be published in the EBRAINS Knowledge Graph, 248 -only members of the collab will be able to view the model entry, in the Model Catalog app 249 -or using the Model Validation Python client. 219 +For feedback, requests, or contributions, please get in touch with the openMINDS development team via 250 250 251 -After publication, the model will appear in the [[EBRAINS public search results>>https://search.kg.ebrains.eu/?category=Model||rel="noopener noreferrer" target="_blank"]], and will receive a DOI. 221 +* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]] 222 +* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]] 223 +* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]] 252 252 253 - To request publication, [[contact EBRAINS support>>https://ebrains.eu/support||rel="noopener noreferrer" target="_blank"]], providing the collab name and the model name or ID.225 +---- 254 254 227 +== **The curation team: meet the curators** == 255 255 256 - Curatorswill thenperformanumber of checks:229 +The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described. 257 257 258 -1. Does the model description provide sufficient context to understand the purpose and use of the model? 259 -1. Does the code repository contain a licence file, explaining the conditions for reusing the code? 260 -1. Does the model have a clearly defined version identifier (e.g. v1.0)? For models in a Git repository, the version identifier should match the name of a tag or release. 231 +The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 232 + 261 261 262 - Thecurators will also takea snapshotof yourmodel code.234 +**Located in Norway:** 263 263 264 - *For modelsin public Gitrepositories, we archive a copyof therepository in [[Software Heritage>>https://www.softwareheritage.org/||rel="noopener noreferrer"target="_blank"]].265 - * For modelsin a collab Bucket or Drive, wemakea read-onlycopyof theode in a public containerin theEBRAINS repository.236 +|(% style="width:303px" %)((( 237 +[[image:My project2.jpg||height="209" width="167"]] 266 266 267 -Once this is done, you will be invited to review a preview of how the model entry will appear in the KG Search, 268 -and will have the opportunity to request modifications prior to approval and publication. 239 +**Archana Golla** 269 269 270 ----- 241 +(% class="small" %)Curation Scientist 242 +Neuroscience (PhD)(%%) 243 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy** 244 +)))|(% style="width:303px" %)((( 245 +[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]] 271 271 272 - ===Stepby Step - Software ===247 +**Camilla H. Blixhavn** 273 273 249 +(% class="small" %)Curation Scientist, 250 +Phd Student 251 +Neuroscience (M. Sc.)(%%) 252 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration** 253 +)))|(% style="width:303px" %)((( 254 +[[image:My project (1).jpg||height="209" width="167"]] 274 274 275 -(% class="box floatinginfobox" id="software-curation-infographic" %) 276 -((( 277 -(% style="text-align:center" %) 278 -//Software curation at a glance// 279 -// // 280 -[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] 281 -))) 256 +**Ingrid Reiten** 282 282 283 -(% style="margin-left:15px" %)[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]] 258 +(% class="small" %)Curation Scientist, 259 +Phd Student 260 +Neuroscience (M. Sc.)(%%) 261 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity** 262 +)))|(% style="width:303px" %)((( 263 +[[image:My project1.jpg||height="209" width="167"]] 284 284 285 -1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph. 286 -1. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary. 287 -1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community. 265 +**Sophia Pieschnik** 288 288 289 -If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]]. 267 +(% class="small" %)Curation Scientist 268 +Neurocognitive Psychology (M. Sc.)(%%) 269 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging ** 270 +))) 290 290 291 -For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic on the right. 272 +|(% style="width:303px" %)((( 273 +[[image:My project.jpg||height="209" width="167"]] 292 292 275 +**Heidi Kleven** 293 293 294 ----- 277 +(% class="small" %)Curation Scientist, 278 +Phd Student 279 +Neuroscience (M. Sc.)(%%) 280 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases** 281 +)))| | | 295 295 296 -=== Sharing human subject data === 283 + 284 +\\**Located in Germany:** 297 297 298 -(% class="box floatinginfobox" %) 299 -((( 300 -**Human subject data that can be shared on EBRAINS:** 301 -// // 302 -// - Post-mortem data// 303 -// - Aggregated data// 304 -// - Strongly pseudonymized or de-identified subject data// 305 -// with a legal basis for sharing (e.g. Informed Consent)// 306 -// // 286 +|(% style="width:303px" %)((( 287 +[[image:My project (2).jpg||height="209" width="167"]] 307 307 308 -(% class="small" %) 309 -//If you have human data that does not qualify as any of the above,// 310 -//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.// 311 -))) 289 +**Jan Gündling** 312 312 291 +(% class="small" %)Curation Scientist, 292 +Phd Student 293 +Sensors and Cognitive Psychology (M. Sc.)(%%) 294 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction** 295 +)))|(% style="width:303px" %)((( 296 + 313 313 314 -Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]]. 315 315 316 -Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG). 317 317 318 -The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers. 319 319 320 -The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG. 321 321 322 -The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services. 323 323 324 ----- 325 325 326 -== **The openMINDS metadata framework** == 327 327 328 -(% class="box floatinginfobox" %) 329 -((( 330 -[[[[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png||alt="openMINDS logo" height="87" width="164"]]>>https://github.com/HumanBrainProject/openMINDS]] 331 -))) 332 332 333 -openMINDS is a community-driven, open-source metadata framework for linked data, as used in graph database systems, such as the EBRAINS Knowledge Graph. It is composed of multiple metadata models with interlinked schemas, libraries of serviceable metadata instances, and supportive tooling (e.g., [[openMINDS Python>>https://github.com/openMetadataInitiative/openMINDS_Python]] or [[openMINDS Matlab>>https://github.com/openMetadataInitiative/openMINDS_MATLAB]]). A full documentation (for users and contributors) of the openMINDS framework can be found on [[ReadTheDocs>>https://openminds-documentation.readthedocs.io||rel="noopener noreferrer" target="_blank"]]. 334 334 335 -For feedback, requests, or contributions, please get in touch with the openMINDS development team via 336 336 337 -* [[support@openmetadatainitiative.org>>mailto:mailto:support@openmetadatainitiative.org]] 338 -* [[GitHub Issues>>https://github.com/openMetadataInitiative/openMINDS/issues]] (for metadata schemas) 339 -* [[GitHub Issues>>https://github.com/openMetadataInitiative/openMINDS_instances/issues]] (for metadata instances) 340 -* [[openMINDS Community Forum>>https://neurostars.org/t/openminds-community-forum-virtual]] 308 +**Lyuba Zehl** 341 341 310 +(% class="small" %)Knowledge Systems Engineer 311 +Dr. rer. nat. (Systems Neuroscience)(%%) 312 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis** 313 +)))|(% style="width:303px" %) | 314 + 342 342 ---- 343 343 344 344 == **Add practical value to your shared data, model or software** == 345 345 346 346 320 +---- 321 + 347 347 === **Showcase shared data, models or software in other services** === 348 348 349 -Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services. 324 +Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services. 350 350 326 +**Viewer for 2D images ** 351 351 352 -|(% colspan="2" %)**Viewer for 2D images** 353 -|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]]. 354 -|(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options** 355 -|[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]]. 356 -|(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization** 357 -|[[image:3Datlas_screenshot.PNG]]|Upload your data to the //Siibra-explorer//: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]]. 358 -|(% colspan="2" %)**Use your research product in an interactive publication** 359 -|[[image:LivePaper_screenshot.PNG]]|Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]]. 328 +* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]]. 360 360 330 +**Viewer for sequential atlas-registered 2D images with annotation options** 331 + 332 +* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]]. 333 + 334 +**Use your research product in an interactive publication ** 335 + 336 +* Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]]. 337 + 338 +**Interactive 3D atlas viewer with options for data visualization** 339 + 340 +* Upload your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]]. 341 + 361 361 ---- 362 362 363 363 ==== **Add a tutorial or learning resource ** ==== ... ... @@ -373,19 +373,8 @@ 373 373 374 374 ---- 375 375 376 -== ** EBRAINScommitstothe FAIR principles** ==357 +=== **The benefits of sharing data ** === 377 377 378 -In 2016, the 'FAIR Guiding Principles for the management and guardianship of scientific data'{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}} were introduced to the scientific community. The objective of the authors was to provide a set of general recommendations aimed at enhancing the Findability, Accessibility, Interoperability, and Reusability of digital resources (data). They emphasize the importance of making data more open, discoverable, and usable, ultimately facilitating collaboration and knowledge sharing within the scientific community. Today, the FAIR principles are widely recognized and adopted as best practices in data management and stewardship across scientific fields. 379 - 380 -In EBRAINS, all datasets, models and software shared go through a streamlined curation process that ensures relevant annotation of the data using the [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS]] metadata framework and integration into the [[EBRAINS Knowledge Graph>>url:https://docs.kg.ebrains.eu/]] metadata management system. The research products are Findable and Accessible through the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/?category=Dataset]] as dataset/model/software cards that display further information regarding the dataset's Interoperability and Reusability. 381 - 382 -To further specify how EBRAINS aligns with the FAIR principles, we have assessed the FAIRness of datasets shared in the EBRAINS Knowledge Graph following the [[FAIRsFAIR Data Object Assessment Metrics>>https://zenodo.org/record/6461229||style="background-color: rgb(255, 255, 255); --darkreader-inline-bgcolor: #1c1e1f;"]]: see our **[[FAIR assessment of EBRAINS datasets>>doc:.FAIR assessment of EBRAINS datasets.WebHome]]. ** 383 - 384 - 385 ----- 386 - 387 -== **General benefits of sharing data ** == 388 - 389 389 By sharing your data via EBRAINS, you gain access to the following benefits: 390 390 391 391 [[image:image-20230324170841-3.png]] ... ... @@ -392,137 +392,63 @@ 392 392 393 393 394 394 395 -We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship. Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product. 365 +We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}. Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product. 396 396 397 397 ---- 398 398 399 -== **Frequently asked questions ** == 369 +=== **Frequently asked questions ** === 400 400 401 ->Is the curation process time consuming and difficult? 371 +((( 372 +==== ==== 402 402 403 -No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible. 374 +((( 375 +>The curation process is time consuming and difficult 376 +))) 377 +))) 404 404 405 ->Is sharing my data also beneficial for me or only for others? 379 +(% class="wikigeneratedid" id="HHowcanIshareA0models3F" %) 380 +Publishing your data naturally takes some time and effort but we will support you as much as possible. If communication is on a regular basis, we are able to finish basic curation - from the initial contact to dataset release - within two weeks. 406 406 407 - When youpublish yourdatavia EBRAINS, we provide comprehensivedata management supportand safelong term storage - allfree ofcharge. Additionally,your data can be cited, just like a scientific journalarticle. Sharing your datamayevenleadtoew funding opportunities. Many funders specificallysupportprojects that arepart of the “Open Science” initiative.382 +>Sharing my data is not beneficial for me - only for others 408 408 409 ->Can my data be too insignificant to share? 410 410 411 - No, thereisnosuchthingasinsignificantdata.Data thatisconsideredinsignificantforagiventopic,mayhavegreat significancefor another.By making“insignificant”datapubliclyavailable,otherresearchersmay find somethinginterestingthatwasoff-topicfor your ownpurposes.385 +When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative. 412 412 413 -> Can my databe easilymisusedifIshareit?387 +>My data is too insignificant to share 414 414 415 -No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use. 416 416 417 - >CanIsharemydatabefore mypaper is published?390 +There is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes. 418 418 419 - Yes, ifyoudo not wantto shareyour data before publishingtheresultsin an article,youcan publish your datasetwith an embargostatus. This will makeit possible to find informationaboutthedatawithoutmakingthedata itself available, and give you a citeable DOI.392 +>My data can easily be misused if I share it with the world 420 420 421 ->Can I lose my competitive edge if I share my data before I publish the associated paper? 422 422 423 - No, publishing your datadoesnot meanthat otherscan use it howeverthey want. Use of yourdatawill require citation, andbychoosinganappropriateCreative Commons licence youdecidewhat othersare allowedto do withit. Ifyou still feelworried,you canpublishyourdataundermbargo, and inthisway delaythe date ofdatarelease,butstill maketpossiblefor othersto find theinformationaboutthedata.395 +Your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use. 424 424 397 +>I don't think I'm allowed to share my data 425 425 426 ----- 427 427 428 - ==(%style="--darkreader-inline-color:#f1ede6;color:#1a202c;font-family:inherit;font-size:29px"%)**The curationteam:meet thecurators**(%%)==400 +Many institutions are still very careful about what can be shared and how, but the situation is constantly evolving. As a researcher providing data, you will be asked to fill out an ethics compliance survey which survey to ensure that data published through the EBRAINS platform has been collected according to EU regulations. We are working on solutions for sharing anonymised human data that complies with GDPR standards to protect the identity of research subjects. 429 429 430 - The EBRAINScurators help researchers publish their research usingtheEBRAINS ResearchInfrastructure.Acurator’s job is similarto the jobof aneditorofascientific journal,checking the data isorganized,understandable, accessible andsufficientlydescribed.402 +>I can't share my data before my paper is published 431 431 432 -The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 433 - 434 434 435 - **Located inNorway**405 +If you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI. 436 436 437 -|(% style="width:303px" %)((( 438 -[[image:My project2.jpg||height="209" width="167"]] 407 +>If I share my data before I publish the associated paper, I will lose my competitive edge 439 439 440 -**Archana Golla** 441 441 442 -(% class="small" %)Curation Scientist 443 -Neuroscience (PhD)(%%) 444 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Behavioral neuroscience and microscopy** 445 -)))|(% style="width:303px" %)((( 446 -[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]] 410 +Publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data. 447 447 448 -**Camilla H. Blixhavn** 449 449 450 -(% class="small" %)Curation Scientist, 451 -Phd Student 452 -Neuroscience (M. Sc.)(%%) 453 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroanatomy and data integration** 454 -)))|(% style="width:303px" %)((( 455 -[[image:My project (1).jpg||height="209" width="167"]] 456 - 457 -**Ingrid Reiten** 458 - 459 -(% class="small" %)Curation Scientist, 460 -Phd Student 461 -Neuroscience (M. Sc.)(%%) 462 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroanatomy and structural connectivity** 463 -)))|(% style="width:303px" %)((( 464 -[[image:My project1.jpg||height="209" width="167"]] 465 - 466 -**Sophia Pieschnik** 467 - 468 -(% class="small" %)Curation Scientist 469 -Neurocognitive Psychology (M. Sc.)(%%) 470 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroimaging ** 471 -))) 472 - 473 -|(% style="width:303px" %)((( 474 -[[image:My project.jpg||height="209" width="167"]] 475 - 476 -**Heidi Kleven** 477 - 478 -(% class="small" %)Curation Scientist, 479 -Phd Student 480 -Neuroscience (M. Sc.)(%%) 481 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroanatomy and brain atlases** 482 -)))| | | 483 - 484 - 485 -\\**Located in Germany** 486 - 487 -|(% style="width:303px" %)((( 488 -[[image:My project (2).jpg||height="209" width="167"]] 489 - 490 -**Jan Gündling** 491 - 492 -(% class="small" %)Curation Scientist, 493 -Phd Student 494 -Sensors and Cognitive Psychology (M. Sc.)(%%) 495 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Human-Computer Interaction** 496 -)))|(% style="width:303px" %)((( 497 -[[image:Lyuba.jpg||height="209" width="167"]] 498 - 499 -**Lyuba Zehl** 500 - 501 -(% class="small" %)Knowledge Systems Engineer 502 -Dr. rer. nat. (Systems Neuroscience)(%%) 503 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis** 504 -)))|(% style="width:303px" %) |(% style="width:303px" %) 505 - 506 506 ---- 507 507 508 - 509 - 510 ----- 511 - 512 512 == Contact == 513 513 514 514 [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]] 515 515 516 ----- 517 517 518 -== Affiliated laboratories == 519 - 520 -//Institute of Basic Medical Sciences,** **University of Oslo, Norway (PI: Jan G. Bjaalie, Trygve B. Leergaard)// 521 - 522 -//Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Germany (PI: Timo Dicksheid)// 523 - 524 ----- 525 - 526 -== References == 527 - 528 528 {{putFootnotes/}} 421 +~)~)~)~)~)~) 422 +~)~)~) 423 +~)~)~)~)~)~)~)~)~) 424 +~)~)~)~)~)~)
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