Changes for page Data Curation

Last modified by abonard on 2025/06/03 10:55
From version 226.1
edited by signyben
on 2024/08/27 15:23
Change comment: There is no comment for this version
To version 228.1
edited by puchades
on 2025/05/07 15:03
Change comment: There is no comment for this version

Summary

Details

Page properties
Author
... ... @@ -1,1 +1,1 @@
1 -XWiki.signyben
1 +XWiki.puchades
Content
... ... @@ -84,7 +84,7 @@
84 84  //with all you need to know//
85 85  //to share data on EBRAINS: //
86 86  // //
87 -[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
87 +[[~[~[image:image-20230324171114-2.png~|~|height="150" width="106"~]~]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
88 88  )))
89 89  
90 90  
... ... @@ -108,8 +108,7 @@
108 108  //with guidelines
109 109  on data organization: //
110 110  
111 -(% style="text-align:center" %)
112 -[[[[image:image-20230621121014-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]]
111 +[[~[~[image:image-20230621121014-1.png~|~|data-xwiki-image-style-alignment="center" height="150" width="106"~]~]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]]
113 113  )))
114 114  
115 115  (% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]](%%)**Ensure data is structured consistently prior to upload. **
... ... @@ -166,7 +166,7 @@
166 166  about the EBRAINS Data//
167 167  //Descriptor//
168 168  // //
169 -[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
168 +[[~[~[image:image-20230324171109-1.png~|~|height="150" width="106"~]~]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
170 170  )))
171 171  
172 172  ==== **5. Preview and publish** ====
... ... @@ -316,7 +316,7 @@
316 316  
317 317  (% class="box floatinginfobox" %)
318 318  (((
319 -[[[[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png||alt="openMINDS logo" height="87" width="164"]]>>https://github.com/HumanBrainProject/openMINDS]]
318 +[[~[~[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png~|~|alt="openMINDS logo" height="87" width="164"~]~]>>https://github.com/HumanBrainProject/openMINDS]]
320 320  )))
321 321  
322 322  openMINDS is a community-driven, open-source metadata framework for linked data, as used in graph database systems, such as the EBRAINS Knowledge Graph. It is composed of multiple metadata models with interlinked schemas, libraries of serviceable metadata instances, and supportive tooling (e.g., [[openMINDS Python>>https://github.com/openMetadataInitiative/openMINDS_Python]] or [[openMINDS Matlab>>https://github.com/openMetadataInitiative/openMINDS_MATLAB]]). A full documentation (for users and contributors) of the openMINDS framework can be found on [[ReadTheDocs>>https://openminds-documentation.readthedocs.io||rel="noopener noreferrer" target="_blank"]].
... ... @@ -339,7 +339,7 @@
339 339  
340 340  
341 341  |(% colspan="2" %)**Viewer for 2D images**
342 -|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
341 +|[[image:MIO_screenshot.PNG]]|Integrate image data with //SeriesZoom viewer//: EBRAINS viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example.
343 343  |(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options**
344 344  |[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
345 345  |(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization**
... ... @@ -412,92 +412,6 @@
412 412  No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
413 413  
414 414  
415 -----
416 -
417 -== (% style="--darkreader-inline-color:#f1ede6; color:#1a202c; font-family:inherit; font-size:29px" %)**The curation team: meet the curators**(%%) ==
418 -
419 -The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described.
420 -
421 -The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 
422 -
423 -
424 -**Located in Norway**
425 -
426 -|(% style="width:303px" %)(((
427 -[[image:My project2.jpg||height="209" width="167"]]
428 -
429 -**Archana Golla**
430 -
431 -(% class="small" %)Curation Scientist
432 -Neuroscience (PhD)(%%)
433 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Behavioral neuroscience and microscopy**
434 -)))|(% style="width:303px" %)(((
435 -[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
436 -
437 -**Camilla H. Blixhavn**
438 -
439 -(% class="small" %)Curation Scientist,
440 -Phd Student
441 -Neuroscience (M. Sc.)(%%)
442 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroanatomy and data integration**
443 -)))|(% style="width:303px" %)(((
444 -[[image:My project (1).jpg||height="209" width="167"]]
445 -
446 -**Ingrid Reiten**
447 -
448 -(% class="small" %)Curation Scientist,
449 -Phd Student
450 -Neuroscience (M. Sc.)(%%)
451 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroanatomy and structural connectivity**
452 -)))|(% style="width:303px" %)(((
453 -[[image:My project1.jpg||height="209" width="167"]]
454 -
455 -**Sophia Pieschnik**
456 -
457 -(% class="small" %)Curation Scientist
458 -Neurocognitive Psychology (M. Sc.)(%%)
459 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroimaging **
460 -)))
461 -
462 -|(% style="width:303px" %)(((
463 -[[image:My project.jpg||height="209" width="167"]]
464 -
465 -**Heidi Kleven**
466 -
467 -(% class="small" %)Curation Scientist,
468 -Phd Student
469 -Neuroscience (M. Sc.)(%%)
470 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroanatomy and brain atlases**
471 -)))| | |
472 -
473 -
474 -\\**Located in Germany**
475 -
476 -|(% style="width:303px" %)(((
477 -[[image:My project (2).jpg||height="209" width="167"]]
478 -
479 -**Jan Gündling**
480 -
481 -(% class="small" %)Curation Scientist,
482 -Phd Student
483 -Sensors and Cognitive Psychology (M. Sc.)(%%)
484 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Human-Computer Interaction**
485 -)))|(% style="width:303px" %)(((
486 -[[image:Lyuba.jpg||height="209" width="167"]]
487 -
488 -**Lyuba Zehl**
489 -
490 -(% class="small" %)Knowledge Systems Engineer
491 -Dr. rer. nat. (Systems Neuroscience)(%%)
492 -(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
493 -)))|(% style="width:303px" %) |(% style="width:303px" %)
494 -
495 -----
496 -
497 -
498 -
499 -----
500 -
501 501  == Contact ==
502 502  
503 503  [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
Public

Data Curation