Changes for page Data Curation

Last modified by abonard on 2025/06/03 10:55
From version 228.1
edited by puchades
on 2025/05/07 15:03
Change comment: There is no comment for this version
To version 226.1
edited by signyben
on 2024/08/27 15:23
Change comment: There is no comment for this version

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Author
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1 -XWiki.puchades
1 +XWiki.signyben
Content
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84 84  //with all you need to know//
85 85  //to share data on EBRAINS: //
86 86  // //
87 -[[~[~[image:image-20230324171114-2.png~|~|height="150" width="106"~]~]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
87 +[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
88 88  )))
89 89  
90 90  
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108 108  //with guidelines
109 109  on data organization: //
110 110  
111 -[[~[~[image:image-20230621121014-1.png~|~|data-xwiki-image-style-alignment="center" height="150" width="106"~]~]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]]
111 +(% style="text-align:center" %)
112 +[[[[image:image-20230621121014-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]]
112 112  )))
113 113  
114 114  (% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]](%%)**Ensure data is structured consistently prior to upload. **
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165 165  about the EBRAINS Data//
166 166  //Descriptor//
167 167  // //
168 -[[~[~[image:image-20230324171109-1.png~|~|height="150" width="106"~]~]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
169 +[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
169 169  )))
170 170  
171 171  ==== **5. Preview and publish** ====
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315 315  
316 316  (% class="box floatinginfobox" %)
317 317  (((
318 -[[~[~[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png~|~|alt="openMINDS logo" height="87" width="164"~]~]>>https://github.com/HumanBrainProject/openMINDS]]
319 +[[[[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png||alt="openMINDS logo" height="87" width="164"]]>>https://github.com/HumanBrainProject/openMINDS]]
319 319  )))
320 320  
321 321  openMINDS is a community-driven, open-source metadata framework for linked data, as used in graph database systems, such as the EBRAINS Knowledge Graph. It is composed of multiple metadata models with interlinked schemas, libraries of serviceable metadata instances, and supportive tooling (e.g., [[openMINDS Python>>https://github.com/openMetadataInitiative/openMINDS_Python]] or [[openMINDS Matlab>>https://github.com/openMetadataInitiative/openMINDS_MATLAB]]). A full documentation (for users and contributors) of the openMINDS framework can be found on [[ReadTheDocs>>https://openminds-documentation.readthedocs.io||rel="noopener noreferrer" target="_blank"]].
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338 338  
339 339  
340 340  |(% colspan="2" %)**Viewer for 2D images**
341 -|[[image:MIO_screenshot.PNG]]|Integrate image data with //SeriesZoom viewer//: EBRAINS viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example.
342 +|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
342 342  |(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options**
343 343  |[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
344 344  |(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization**
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411 411  No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
412 412  
413 413  
415 +----
416 +
417 +== (% style="--darkreader-inline-color:#f1ede6; color:#1a202c; font-family:inherit; font-size:29px" %)**The curation team: meet the curators**(%%) ==
418 +
419 +The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described.
420 +
421 +The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 
422 +
423 +
424 +**Located in Norway**
425 +
426 +|(% style="width:303px" %)(((
427 +[[image:My project2.jpg||height="209" width="167"]]
428 +
429 +**Archana Golla**
430 +
431 +(% class="small" %)Curation Scientist
432 +Neuroscience (PhD)(%%)
433 +(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Behavioral neuroscience and microscopy**
434 +)))|(% style="width:303px" %)(((
435 +[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
436 +
437 +**Camilla H. Blixhavn**
438 +
439 +(% class="small" %)Curation Scientist,
440 +Phd Student
441 +Neuroscience (M. Sc.)(%%)
442 +(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroanatomy and data integration**
443 +)))|(% style="width:303px" %)(((
444 +[[image:My project (1).jpg||height="209" width="167"]]
445 +
446 +**Ingrid Reiten**
447 +
448 +(% class="small" %)Curation Scientist,
449 +Phd Student
450 +Neuroscience (M. Sc.)(%%)
451 +(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroanatomy and structural connectivity**
452 +)))|(% style="width:303px" %)(((
453 +[[image:My project1.jpg||height="209" width="167"]]
454 +
455 +**Sophia Pieschnik**
456 +
457 +(% class="small" %)Curation Scientist
458 +Neurocognitive Psychology (M. Sc.)(%%)
459 +(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroimaging **
460 +)))
461 +
462 +|(% style="width:303px" %)(((
463 +[[image:My project.jpg||height="209" width="167"]]
464 +
465 +**Heidi Kleven**
466 +
467 +(% class="small" %)Curation Scientist,
468 +Phd Student
469 +Neuroscience (M. Sc.)(%%)
470 +(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Neuroanatomy and brain atlases**
471 +)))| | |
472 +
473 +
474 +\\**Located in Germany**
475 +
476 +|(% style="width:303px" %)(((
477 +[[image:My project (2).jpg||height="209" width="167"]]
478 +
479 +**Jan Gündling**
480 +
481 +(% class="small" %)Curation Scientist,
482 +Phd Student
483 +Sensors and Cognitive Psychology (M. Sc.)(%%)
484 +(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Human-Computer Interaction**
485 +)))|(% style="width:303px" %)(((
486 +[[image:Lyuba.jpg||height="209" width="167"]]
487 +
488 +**Lyuba Zehl**
489 +
490 +(% class="small" %)Knowledge Systems Engineer
491 +Dr. rer. nat. (Systems Neuroscience)(%%)
492 +(% class="small" style="--darkreader-inline-color:#cac2b7; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
493 +)))|(% style="width:303px" %) |(% style="width:303px" %)
494 +
495 +----
496 +
497 +
498 +
499 +----
500 +
414 414  == Contact ==
415 415  
416 416  [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
Public

Data Curation