Attention: Jupyter services at the JSC site are currently unreachable. When using the Collaboratory Lab, users are advised to select the Cineca execution site instead. We apologize for the inconvenience and are working to resolve the issue as quickly as possible.


Changes for page Data Curation

Last modified by abonard on 2025/06/03 10:55
From version 229.1
edited by abonard
on 2025/05/22 15:11
Change comment: There is no comment for this version
To version 227.1
edited by spieschnik
on 2025/03/06 10:52
Change comment: There is no comment for this version

Summary

Details

Page properties
Author
... ... @@ -1,1 +1,1 @@
1 -XWiki.abonard
1 +XWiki.spieschnik
Content
... ... @@ -207,7 +207,7 @@
207 207  We recommend storing model code and/or configuration files in an online Git repository, for example on GitHub.
208 208  This repository should be public when you publish the model, but a private repository can be used for model development.
209 209  
210 -Alternatively, you can upload code to the Collab Drive (in this case, curators will copy it to a read-only Bucket upon publication) or Bucket storage.
210 +Alternatively, you can upload code to the Collab Drive or Bucket storage.
211 211  
212 212  ==== 4. Submit metadata ====
213 213  
... ... @@ -338,7 +338,7 @@
338 338  
339 339  
340 340  |(% colspan="2" %)**Viewer for 2D images**
341 -|[[image:MIO_screenshot.PNG]]|Integrate image data with //SeriesZoom viewer//: EBRAINS viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example.
341 +|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
342 342  |(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options**
343 343  |[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
344 344  |(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization**
Public

Data Curation