Changes for page Data Curation

Last modified by abonard on 2025/06/03 10:55
From version 229.2
edited by abonard
on 2025/06/03 10:55
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To version 227.1
edited by spieschnik
on 2025/03/06 10:52
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1 -XWiki.abonard
1 +XWiki.spieschnik
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207 207  We recommend storing model code and/or configuration files in an online Git repository, for example on GitHub.
208 208  This repository should be public when you publish the model, but a private repository can be used for model development.
209 209  
210 -Alternatively, you can upload code to the Collab Drive (in this case, curators will copy it to a read-only Bucket upon publication) or Bucket storage.
210 +Alternatively, you can upload code to the Collab Drive or Bucket storage.
211 211  
212 212  ==== 4. Submit metadata ====
213 213  
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260 260  
261 261  The curators will also take a snapshot of your model code.
262 262  
263 -* For models in public Git repositories, we archive a copy of the repository in [[Software Heritage>>https://www.softwareheritage.org/||rel="noopener noreferrer" target="_blank"]] (via the updateSWH extension).
263 +* For models in public Git repositories, we archive a copy of the repository in [[Software Heritage>>https://www.softwareheritage.org/||rel="noopener noreferrer" target="_blank"]].
264 264  * For models in a collab Bucket or Drive, we make a read-only copy of the code in a public container in the EBRAINS repository.
265 265  
266 266  Once this is done, you will be invited to review a preview of how the model entry will appear in the KG Search,
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338 338  
339 339  
340 340  |(% colspan="2" %)**Viewer for 2D images**
341 -|[[image:MIO_screenshot.PNG]]|Integrate image data with //SeriesZoom viewer//: EBRAINS viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example.
341 +|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
342 342  |(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options**
343 343  |[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
344 344  |(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization**
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Data Curation