Version 1.1 by ingrreit on 2023/09/27 15:51
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ingrreit 1.1 1 == ==
2
3 ==== Or code ====
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5 Code blocks can be added by using the code macro:
6
7 {{code language="python"}}
8 x = 1
9 if x == 1:
10 # indented four spaces
11 print("x is 1.")
12 {{/code}}
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15 (% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)Neuroscientific datasets shared via EBRAINS go through a streamlined curation process, the openneurodata workflow,  that ensures relevant annotation of the data using (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__openMINDS__>>url:https://github.com/HumanBrainProject/openMINDS||style="text-decoration:none"]](% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %), a metadata framework and their integration into (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__EBRAINS Knowledge Graph__>>url:https://docs.kg.ebrains.eu/||style="text-decoration:none"]](% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %), a metadata management system. The datasets are Findable and Accessible through (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__Knowledge Graph Search__>>url:https://search.kg.ebrains.eu/?category=Dataset||style="text-decoration:none"]](% style="background-color:#ffffff; color:#444746; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %) as a dataset card that displays information regarding dataset's Interoperability and Reusability.
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18 (% style="line-height:1.38; text-align:justify" %)
19 (% style="background-color:#ffffff; color:#333333; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %)This assessment highlights the ways in which EBRAINS fulfills the 17 core data FAIRness metrics proposed by (%%)[[(% style="-webkit-text-decoration-skip:none; background-color:#ffffff; color:#1155cc; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration-skip-ink:none; text-decoration:underline; white-space:pre-wrap" %)__FAIRsFAIR__>>url:https://zenodo.org/record/6461229||style="text-decoration:none"]](% style="background-color:#ffffff; color:#333333; font-family:Roboto,sans-serif; font-size:10.5pt; font-style:normal; font-variant:normal; font-weight:400; text-decoration:none; white-space:pre-wrap" %) for sharing datasets.
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22 |(% style="width:365px" %)(% style="color:#000000; font-family:Arial,sans-serif; font-size:11pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FINDABLE**|(% style="width:308px" %)
23 |(% style="width:365px" %)(((
24 (% style="line-height:1.38; text-align:justify" %)
25 (% style="background-color:#ffffff; color:#1f1f1f; font-family:Arial,sans-serif; font-size:10pt; font-style:normal; font-variant:normal; font-weight:700; text-decoration:none; white-space:pre-wrap" %)**FsF-F1-01D - Data is assigned a globally unique identifier**
26 )))|(% style="width:308px" %) (((
27 (% style="line-height:1.38; text-align:justify" %)
28 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Information about access restrictions or rights, such as for sensitive human data, can be identified in the EBRAINS data card.
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33 |(% style="width:365px" %) (((
34 (% style="line-height:1.38; text-align:justify" %)
35 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-02M - Metadata is accessible through a standardized communication protocol**
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37 \\
38 )))|(% style="width:308px" %) (((
39 (% style="line-height:1.38; text-align:justify" %)
40 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
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45 |(% style="width:365px" %) (((
46 (% style="line-height:1.38; text-align:justify" %)
47 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-03D - Data is accessible through a standardized communication protocol **
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52 (% style="line-height:1.38; text-align:justify" %)
53 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
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58 |(% style="width:365px" %) (((
59 (% style="line-height:1.38; text-align:justify" %)
60 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A2-01M - Metadata remains available, even if the data is no longer available. **
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62 (% style="line-height:1.38; text-align:justify" %)
63 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Metadata includes a resolvable link to data based on the https protocol. If this link is broken, the metadata will still be available (as ensured in the EBRAINS policies).
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68 |(% style="width:365px" %)
69 (% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**ACCESSIBLE**|(% style="width:308px" %)
70 |(% style="width:365px" %) (((
71 (% style="line-height:1.38; text-align:justify" %)
72 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-01M - Metadata contains access level and access conditions of the data. **
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77 (% style="line-height:1.38; text-align:justify" %)
78 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Information about access restrictions or rights, such as for sensitive human data, can be identified in the EBRAINS data card.
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83 |(% style="width:365px" %) (((
84 (% style="line-height:1.38; text-align:justify" %)
85 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-02M - Metadata is accessible through a standardized communication protocol**
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90 (% style="line-height:1.38; text-align:justify" %)
91 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
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97 (% style="line-height:1.38; text-align:justify" %)
98 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A1-03D - Data is accessible through a standardized communication protocol **
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103 (% style="line-height:1.38; text-align:justify" %)
104 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The URL for the EBRAINS data card is based on the https protocol. The EBRAINS KG is built on an open API not requiring registration.
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110 (% style="line-height:1.38; text-align:justify" %)
111 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-A2-01M - Metadata remains available, even if the data is no longer available. **
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116 (% style="line-height:1.38; text-align:justify" %)
117 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)Metadata includes a resolvable link to data based on the https protocol. If this link is broken, the metadata will still be available (as ensured in the EBRAINS policies).
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123 (% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**INTEROPERABLE**|(% style="width:308px" %)
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126 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-I1-01M - Metadata is represented using a formal knowledge representation language. **
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132 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS is an open and structured metadata language suited for neuroscience data structures. openMINDS metadata are defined in JSON and JSON-LD.
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138 (% style="line-height:1.38; text-align:justify" %)
139 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-I1-02M - Metadata uses semantic resources. **
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145 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS is a metadata framework that integrates community-wide accepted neuroscience ontologies, in close collaboration with the (%%)[[(% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(17, 85, 204); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: underline; -webkit-text-decoration-skip: none; text-decoration-skip-ink: none" %)__Interlex project__>>url:https://neuinfo.org/interlex/dashboard||style="text-decoration:none"]](% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %).
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152 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-I3-01M -Metadata includes links between the data and its related entities. **
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158 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS metadata schemas include references to internal (linked types) and external metadata (ontology identifier) through internationalized resource identifiers (IRI)
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164 (% style="font-size: 11pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**REUSABLE**|(% style="width:308px" %)
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167 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1-01MD - Metadata specifies the content of the data. **
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169 (% style="line-height:1.38; text-align:justify" %)
170 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)The content of the dataset is thoroughly described in the Data records section of the EBRAINS data descriptor, as well as via openMINDS terms.
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174 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.1-01M - Metadata includes license information under which data can be reused. **
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177 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(0, 0, 0); font-weight: 400; font-style: normal; text-decoration: none" %)All datasets have a Creative Commons license that is added as an openMINDS term.
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184 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.2-01M - Metadata includes provenance information about data creation or generation. **
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190 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)A minimum level of data provenance must be described in the Methods section of the EBRAINS Data descriptor. Data provenance can also be captured in machine-readable metadata as openMINDS protocols and protocol executions, or other modality-specific schemas.  
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197 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.3-01M - Metadata follows a standard recommended by the target research community of the data. **
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203 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)openMINDS is an open and  community-driven metadata standard uniting knowledge from a number of research initiatives.
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210 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 700; font-style: normal; text-decoration: none" %)**FsF-R1.3-02D - Data is available in a file format recommended by the target research community. **
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216 (% style="font-size: 10pt; font-variant: normal; white-space: pre-wrap; font-family: Arial, sans-serif; color: rgb(31, 31, 31); background-color: rgb(255, 255, 255); font-weight: 400; font-style: normal; text-decoration: none" %)EBRAINS recommends data providers share data in open file formats. But, proprietary file formats are also accepted when necessary.
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Public

Data Curation

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