Changes for page Distance-Fluctuations
Last modified by emacasali on 2022/09/15 13:34
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... ... @@ -22,14 +22,26 @@ 22 22 low CP values, corresponding to low pair-distance fluctuations, highlight groups of residues that move in a mechanically coordinated way. 23 23 24 24 25 -= =Whohasaccess?==25 += How to use the script = 26 26 27 - Describetheaudience of thiscollab.27 +• __Requisites__ 28 28 29 + - Python 3.0 (or newer version) 29 29 30 - =Whohasaccess?=31 + - Numpy 31 31 32 -Describe the audience of this collab. 33 + - Scipy 34 + 35 + 36 +• __Usage__ 37 + 38 +The script can analyze a MD trajectory and identify the coordinated motions between residues. It can then filter the output matrix based on the distance to identify long-range coordinated motions. 39 + 40 +The script can work both using only C-alphas (using either a pdb or a xyz file) or the sidechains (using a pdb file). 41 + 42 +For more information run: 43 + 44 +{{{ python3 distance_fluctuation.py -h}}} 33 33 ))) 34 34 35 35 ... ... @@ -44,3 +44,5 @@ 44 44 45 45 ))) 46 46 ))) 59 + 60 +