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Changes for page Distance-Fluctuations

Last modified by emacasali on 2022/09/15 13:34

From version 7.2
edited by emacasali
on 2022/09/14 21:47
Change comment: There is no comment for this version
To version 7.3
edited by emacasali
on 2022/09/14 21:51
Change comment: There is no comment for this version

Summary

Details

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Content
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22 22  low CP values, corresponding to low pair-distance fluctuations, highlight groups of residues that move in a mechanically coordinated way.
23 23  
24 24  
25 -= Who has access? =
25 += How to use the script =
26 26  
27 -Describe the audience of this collab.
27 +• __Requisites__
28 +
29 + - Python 3.0 (or newer version)
30 +
31 + - Numpy
32 +
33 + - Scipy
34 +
35 +
36 +• __Usage__
37 +
38 +The script can analyze a MD trajectory and identify the coordinated motions between residues. It can then filter the output matrix based on the distance to identify long-range coordinated motions.
39 +
40 +The script can work both using only C-alphas (using either a pdb or a xyz file) or the sidechains (using a pdb file).
41 +
42 +For more information run:
43 +
44 +{{{ python3 distance_fluctuation.py -h}}}
28 28  )))
29 29  
30 30  
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39 39  
40 40  )))
41 41  )))
59 +
60 +