Warning: The EBRAINS Drive and EBRAINS Lab will down on Tuesday, the 8th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour.


Changes for page Distance-Fluctuations

Last modified by emacasali on 2022/09/15 13:34

From version 7.3
edited by emacasali
on 2022/09/14 21:51
Change comment: There is no comment for this version
To version 7.1
edited by emacasali
on 2022/09/14 21:47
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -22,26 +22,14 @@
22 22  low CP values, corresponding to low pair-distance fluctuations, highlight groups of residues that move in a mechanically coordinated way.
23 23  
24 24  
25 -= How to use the script =
25 +== Who has access? ==
26 26  
27 -• __Requisites__
27 +Describe the audience of this collab.
28 28  
29 - - Python 3.0 (or newer version)
30 30  
31 - - Numpy
30 += Who has access? =
32 32  
33 - - Scipy
34 -
35 -
36 -• __Usage__
37 -
38 -The script can analyze a MD trajectory and identify the coordinated motions between residues. It can then filter the output matrix based on the distance to identify long-range coordinated motions.
39 -
40 -The script can work both using only C-alphas (using either a pdb or a xyz file) or the sidechains (using a pdb file).
41 -
42 -For more information run:
43 -
44 -{{{ python3 distance_fluctuation.py -h}}}
32 +Describe the audience of this collab.
45 45  )))
46 46  
47 47  
... ... @@ -56,5 +56,3 @@
56 56  
57 57  )))
58 58  )))
59 -
60 -