Last modified by graber on 2023/09/28 09:25

From version 22.1
edited by graber
on 2021/04/29 21:34
Change comment: There is no comment for this version
To version 23.1
edited by graber
on 2021/04/30 07:14
Change comment: There is no comment for this version

Summary

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16 16  QuickNII is a tool for user guided affine registration (anchoring) of 2D experimental image data, typically high resolution microscopic images, to 3D atlas reference space, facilitating data integration through standardized coordinate systems.|
17 17  |**[[VoluBA>>url:https://voluba-user-doc.apps-dev.hbp.eu/]]**
18 18  volumetric brain anchoring
19 +=== Collaboratory ===
20 +|**[[Collaboratory>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/]]**
21 +Workspaces in the Cloud for your research, development, documentation, and collaboration.
19 19  === Data analysis ===
20 20  |**[[Elephant>>url:https://elephant.readthedocs.io/en/v0.6.4/index.html]]**
21 21  Elephant is an open-source Python library for the analysis of neurophysiology data, using Neo data structures.|**[[Elephant>>url:https://elephant.readthedocs.io/en/latest/index.html]]**
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30 30  |**[[EBRAINS Knowledge Graph>>url:https://kg.ebrains.eu/]]**
31 31  A user-driven, data-sharing and data-management infrastructure accelerating scientific progress by providing access to large collections of curated, heterogeneous neuroscience data.
32 32  === High-performance computing ===
33 -|**[[SLURM plugin for the co-allocation of compute and data resources>>url:https://github.com/HumanBrainProject/coallocation-slurm-plugin/blob/master/README.md]]**
36 +|**[[Fenix>>url:https://fenix-ri.eu/about-fenix/documentation]]**
37 +Delivering e-infrastructure services federated as the Fenix Infrastructure.|**[[SLURM plugin for the co-allocation of compute and data resources>>url:https://github.com/HumanBrainProject/coallocation-slurm-plugin/blob/master/README.md]]**
34 34  A plugin for SLURM used for the co-allocation of compute and data resources.|**[[Unicore>>url:https://www.unicore.eu/documentation/]]**
35 -A set of software components for federated access to high-performance compute and data resources.
39 +A set of software components for federated access to high-performance compute and data resources.|
40 +
41 +=== Link ===
42 +
36 36  === Medical data analytics ===
37 37  |**[[Bids Manager & Pipeline>>url:https://github.com/Dynamap/BIDS_Manager]]**
38 38  Bids Manager is a tool that allows various users to easily import and explore databases in BIDS format. Bids Pipeline, an extension of Bids Manager, allows to launch process on BIDS database.|**[[HiBoP>>url:https://collab.humanbrainproject.eu/#/collab/78584/nav/531987?state=uuid%3Df72e40d9-a0bf-4ab7-8a27-462911107c5f]]**
39 39  3D visualization software for intracranial EEG.
40 40  === Neuromorphic computing ===
41 -|**[[Neuromorphic Platform Python client>>url:https://electronicvisions.github.io/hbp-sp9-guidebook/]]**
42 -Client software for the Human Brain Project Neuromorphic Computing Platform.
48 +|**[[BrainScaleS>>url:https://flagship.kip.uni-heidelberg.de/jss/FileExchange/D9.7.1_Neuromorphic_Platform_Specification_-_public_version.pdf?fID=1887&s=qqdXDg6HuX3&uID=65]]**
49 +Neural network emulation in 1000x accelerated biological real-time.|**[[Neuromorphic Platform Python client>>url:https://electronicvisions.github.io/hbp-sp9-guidebook/]]**
50 +Client software for the Human Brain Project Neuromorphic Computing Platform.|**[[SpiNNaker Jupyter Service>>url:http://spinnakermanchester.github.io/common_pages/5.0.0/How_to_use_Jupyter_notebooks_on_SpiNNaker.pdf]]**
51 +Jupyter notebook service running next to the SpiNNaker 1Million machine in Manchester.|
52 +|**[[SpiNNaker Local Boards>>url:https://spinnakermanchester.github.io/]]**
53 +Physical SpiNNaker boards that are loaned to or owned by individuals or groups, but not connected to the SpiNNaker 1Million machine in Manchester.|**[[SpiNNaker Machine>>url:https://spinnakermanchester.github.io/]]**
54 +The SpiNNaker 1Million core machine in Manchester consisting of 1200 SpiNNaker boards.|**[[SpiNNaker Remote Access>>url:https://flagship.kip.uni-heidelberg.de/jss/FileExchange/D9.7.1_Neuromorphic_Platform_Specification_-_public_version.pdf?fID=1887&s=qqdXDg6HuX3&uID=65]]**
55 +The SpiNNaker batch execution service allowing Neuromorphic Computing Platform jobs to be run on the SpiNNaker 1Million machine in Manchester.|
56 +|**[[SpiNNaker Software>>url:http://spinnakermanchester.github.io/]]**
57 +The Software used to compile and execute Neural Networks described in PyNN on SpiNNaker hardware.|**[[SpiNNaker-NRP integration>>url:http://spinnakermanchester.github.io/common_pages/5.0.0/How_to_use_Jupyter_notebooks_on_SpiNNaker.pdf]]**
58 +Allows the NRP to use SpiNNaker as a brain for robotic simulations.
43 43  === Neurorobotics ===
44 44  |**[[Neurorobotics Platform>>url:https://www.neurorobotics.net/Documentation/nrp/user_manual/index.html]]**
45 45  The NRP supports closed-loop neuroscience and embodied AI by connecting brains and bodies in simulation.