Last modified by graber on 2023/09/28 09:25
From version 53.1
edited by graber
on 2023/04/19 17:47
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To version 54.2
edited by graber
on 2023/05/26 10:06
Change comment: There is no comment for this version

Summary

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45 45  ViSimpl integrates a set of visualization and interaction tools that provide a multi-view visual analysis of brain simultation data.|**[[ilastik>>url:http://ilastik.org/documentation/index.html]]**
46 46  ilastik is a simple, user-friendly tool for interactive image classification, segmentation and analysis.|
47 47  |**[[Brain-cockpit>>url:https://alexisthual.github.io/brain-cockpit/]]**
48 -Web-based application to explore large fMRI datasets and inter-subject alignments.
48 +Web-based application to explore large fMRI datasets and inter-subject alignments.|**[[Cobrawap>>url:https://cobrawap.readthedocs.io/]]**
49 +Cobrawap is a Python-based, adaptable, and reusable pipeline for analyzing cortical wave activity.
49 49  
50 50  === Simulation ===
51 51  
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80 80  LFPy is a Python module for the calculation of extracellular potentials and magnetic signals from activity in multicompartment neuron and network models.|
81 81  
82 82  |**[[Snudda>>url:https://github.com/Hjorthmedh/Snudda/wiki]]**
83 -Snudda is a tool that allows the user to place neurons within multiple volumes, then performs touch detection to infer where putative synapses are based on reconstructed neuron morphologies.
84 +Snudda is a tool that allows the user to place neurons within multiple volumes, then performs touch detection to infer where putative synapses are based on reconstructed neuron morphologies.|**[[BlueNaaS-Subcellular>>url:https://subcellular-bsp-epfl.apps.hbp.eu/static/docs.html]]**
85 +BlueNaaS-Subcellular is designed as a web based environment for the creation and simulation of reaction-diffusion models.|**[[BlueNaaS-Subcellular>>url:https://subcellular-bsp-epfl.apps.hbp.eu/static/docs.html]]**
86 +BlueNaaS-Subcellular is designed as a web based environment for the creation and simulation of reaction-diffusion models|
84 84  
88 +
85 85  === Neurorobotics ===
86 86  
87 87  |**[[Neurorobotics Platform>>url:https://www.neurorobotics.net/Documentation/nrp/user_manual/index.html]]**
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97 97  
98 98  |**[[ImaGIN>>url:https://wiki.ebrains.eu/bin/view/Collabs/quicknii-and-visualign]]**
99 99  SPM-based Matlab toolbox for processing intracranial EEG recordings (SEEG and ECOG).|**[[IntranAt Electrodes>>url:https://intranat.readthedocs.io/]]**
100 -A software to visualize electrodes implantation on image data and prepare database for group studies.
104 +A software to visualize electrodes implantation on image data and prepare database for group studies.|**[[Medical Informatics Platform (MIP)>>url:https://github.com/HBPMedical/mip-docs]]**
105 +The MIP is an open-source platform enabling federated data analysis in a secure environment for centers interested in initiating or joining disease-oriented federations with the aim of analyzing large-scale distributed clinical datasets.|
101 101  
107 +|**[[Human Intracerebral EEG Platform (HIP)>>url:https://hip-infrastructure.github.io/build/html/index.html]]**
108 +The HIP is a state-of-the-art open-source platform, offering integrated tools and workflows for optimized collection, storage, sharing, processing and analysis of multiscale Human intracerebral EEG data.
109 +
110 +
102 102  === Neuromorphic computing ===
103 103  
104 104  |**[[BrainScaleS>>url:https://wiki.ebrains.eu/bin/view/Collabs/neuromorphic/BrainScaleS/]]**