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36	36	Elephant is an open-source Python library for the analysis of neurophysiology data, using Neo data structures.|**[[HBP Validation Framework - Python Client>>url:http://hbp-validation-client.readthedocs.io/]]**
37	37	A Python package for working with the Human Brain Project Model Validation Framework.|**[[Neo>>url:https://neo.readthedocs.io/en/stable/]]**
38	38	an object model for handling electrophysiology data in multiple formats.|
	39	+
39	39	|**[[Neo Viewer>>url:https://neo-viewer.brainsimulation.eu/]]**
40	40	Django/Angular software for graphing neural activity data (analog signals, spike trains etc.) read from Neo files.|**[[NeuroScheme>>url:https://neuroscheme-documentation.readthedocs.io/en/latest/]]**
41	41	NeuroScheme is a tool for navigating, exploring, creating and interacting with NeuroScience data using abstract, schematic or expressive representations.|**[[NeuroTessMesh>>url:https://neurotessmesh-documentation.readthedocs.io/en/latest/]]**
42	42	A Tool for the Generation and Visualization of Neuron Meshes and Adaptive On-the-Fly Refinement|
	44	+
43	43	|**[[Nutil>>url:https://wiki.ebrains.eu/bin/view/Collabs/quint]]**
44	44	Nutil aims to both simplify and streamline the mechanism of pre-and-post processing 2D brain image data from mouse and rat.|**[[ViSimpl>>url:https://visimpl-documentation.readthedocs.io/en/latest/]]**
45	45	ViSimpl integrates a set of visualization and interaction tools that provide a multi-view visual analysis of brain simultation data.|**[[ilastik>>url:http://ilastik.org/documentation/index.html]]**
46	46	ilastik is a simple, user-friendly tool for interactive image classification, segmentation and analysis.|
	49	+
47	47	|**[[Brain-cockpit>>url:https://alexisthual.github.io/brain-cockpit/]]**
48		-Web-based application to explore large fMRI datasets and inter-subject alignments.
	51	+Web-based application to explore large fMRI datasets and inter-subject alignments.|**[[Cobrawap>>url:https://cobrawap.readthedocs.io/]]**
	52	+Cobrawap is a Python-based, adaptable, and reusable pipeline for analyzing cortical wave activity.|**[[Viziphant>>url:https://viziphant.readthedocs.io/en/latest/index.html]]**
	53	+Viziphant provides an easy way to generate plots and interactive visualizations of neuroscientific data and analysis results|
49	49
50	50	=== Simulation ===
51	51
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76	76
77	77	|**[[The Virtual Brain Web-App>>url:http://docs.thevirtualbrain.org/]]**
78	78	The Virtual Brain Web App at HBP.|**[[NeuroR>>url:https://elephant.readthedocs.io/en/latest/index.html]]**
79		-NeuroR is a collection of tools to repair morphologies.|**[[Local Field Potentials in Python>>url:https://lfpy.readthedocs.io/]]**
	84	+NeuroR is a collection of tools to repair morphologies.|**[[LFPy>>url:https://lfpy.readthedocs.io/]]**
80	80	LFPy is a Python module for the calculation of extracellular potentials and magnetic signals from activity in multicompartment neuron and network models.|
81	81
82	82	|**[[Snudda>>url:https://github.com/Hjorthmedh/Snudda/wiki]]**
83		-Snudda is a tool that allows the user to place neurons within multiple volumes, then performs touch detection to infer where putative synapses are based on reconstructed neuron morphologies.
	88	+Snudda is a tool that allows the user to place neurons within multiple volumes, then performs touch detection to infer where putative synapses are based on reconstructed neuron morphologies.|**[[BlueNaaS-Subcellular>>url:https://subcellular-bsp-epfl.apps.hbp.eu/static/docs.html]]**
	89	+BlueNaaS-Subcellular is designed as a web based environment for the creation and simulation of reaction-diffusion models.|
84	84
85	85	=== Neurorobotics ===
86	86
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97	97
98	98	|**[[ImaGIN>>url:https://wiki.ebrains.eu/bin/view/Collabs/quicknii-and-visualign]]**
99	99	SPM-based Matlab toolbox for processing intracranial EEG recordings (SEEG and ECOG).|**[[IntranAt Electrodes>>url:https://intranat.readthedocs.io/]]**
100		-A software to visualize electrodes implantation on image data and prepare database for group studies.
	106	+A software to visualize electrodes implantation on image data and prepare database for group studies.|**[[Medical Informatics Platform (MIP)>>url:https://github.com/HBPMedical/mip-docs]]**
	107	+The MIP is an open-source platform enabling federated data analysis in a secure environment for centers interested in initiating or joining disease-oriented federations with the aim of analyzing large-scale distributed clinical datasets.|
101	101
	109	+|**[[Human Intracerebral EEG Platform (HIP)>>url:https://hip-infrastructure.github.io/build/html/index.html]]**
	110	+The HIP is a state-of-the-art open-source platform, offering integrated tools and workflows for optimized collection, storage, sharing, processing and analysis of multiscale Human intracerebral EEG data.
	111	+
102	102	=== Neuromorphic computing ===
103	103
104	104	|**[[BrainScaleS>>url:https://wiki.ebrains.eu/bin/view/Collabs/neuromorphic/BrainScaleS/]]**