Last modified by graber on 2023/09/28 09:25
From version 63.1
edited by graber
on 2023/07/06 06:51
Change comment: There is no comment for this version
To version 65.1
edited by graber
on 2023/08/11 06:57
Change comment: There is no comment for this version

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32 32  VoluBA (Volumetric Brain Anchoring) is an online service for anchoring of high-resolution volumes of interest from imaging experiments to very large reference volumes.|
33 33  
34 34  |**[[VisuAlign>>url:https://visualign.readthedocs.io]]**
35 -VisuAlign is a tool for applying user-guided nonlinear refinements (inplane) to an existing, affine 2D-to-3D registration, such as created using QuickNII.| | |
35 +VisuAlign is a tool for applying user-guided nonlinear refinements (inplane) to an existing, affine 2D-to-3D registration, such as created using QuickNII.|**[[WebAlign>>url:https://webalign.readthedocs.io]]**
36 +WebAlign is an online tool for spatial registration of histological section images from rodent brains to reference 3D atlases.|**[[WebWarp>>url:https://webwarp.readthedocs.io/en/latest/index.html]]**
37 +WebWarp is an online tool for nonlinear refinement of spatial registration of histological section images from rodent brains to reference 3D atlases.|
36 36  
37 37  === Data analysis ===
38 38  
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97 97  BlueNaaS-Subcellular is designed as a web based environment for the creation and simulation of reaction-diffusion models.|**[[libsonata>>url:https://libsonata.readthedocs.io/en/stable/]]**
98 98  A C++ / Python API for reading SONATA circuit files.|
99 99  
102 +|**[[Brain Scaffold Builder>>url:https://bsb.readthedocs.io/]]**
103 +The BSB is a framework for reconstructing and simulating multi-paradigm neuronal network models. It removes much of the repetitive work associated with writing the required code and lets you focus on the parts that matter. It helps write organized, well-parametrized and explicit code understandable and reusable by your peers.|**[[InSite>>url:https://vrgrouprwth.github.io/insite/]]**
104 +Insite provides a middleware that enables users to acquire data from NEST, Abror and TVB via the in-transit paradigm.|**[[IntraCellular Pathway Modeling>>url:https://github.com/icpm-kth]]**
105 +Tools for data-driven building of subcellular biochemical signaling pathway models, including interoperable modules for model building, calibration, and model analysis.|
106 +
107 +
100 100  === Neurorobotics ===
101 101  
102 102  |**[[Neurorobotics Platform>>url:https://www.neurorobotics.net/Documentation/nrp/user_manual/index.html]]**