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34	34	|**[[VisuAlign>>url:https://visualign.readthedocs.io]]**
35	35	VisuAlign is a tool for applying user-guided nonlinear refinements (inplane) to an existing, affine 2D-to-3D registration, such as created using QuickNII.|**[[WebAlign>>url:https://webalign.readthedocs.io]]**
36	36	WebAlign is an online tool for spatial registration of histological section images from rodent brains to reference 3D atlases.|**[[WebWarp>>url:https://webwarp.readthedocs.io/en/latest/index.html]]**
37		-WebWarp is an online tool for nonlinear refinement of spatial registration of histological section images from rodent brains to reference 3D atlases.|
	37	+WebWarp is an online tool for nonlinear refinement of spatial registration of histological section images from rodent brains to reference 3D atlases.|
38	38
39	39	=== Data analysis ===
40	40
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60	60
61	61	|**[[MeshView>>url:https://meshview-for-brain-atlases.readthedocs.io]]**
62	62	MeshView is a web application for real-time 3D display of surface mesh data representing structural parcellations from volumetric atlases, such as the Waxholm Space Atlas of the Sprague Dawley Rat Brain.|**[[LocaliZoom>>url:https://localizoom.readthedocs.io/en/latest/]]**
63		-Web application for viewing of series of high-resolution 2D images that have been anchored to reference atlases.| |
	63	+Web application for viewing of series of high-resolution 2D images that have been anchored to reference atlases.
	64	+|**[[BluePyEfe>>url:https://bluepyefe.readthedocs.io/en/latest/]]**
	65	+BluePyEfe eases the process of reading and extracting electircal features from experimental recordings.|
64	64
65	65	=== Simulation ===
66	66
67		-|[[**Arbor**>>url:https://docs.arbor-sim.org]]
68		-Arbor is a library for implementing performance portable network simulations of multi-compartment neuron models.|**[[BluePyMM>>url:https://bluepymm.readthedocs.io/en/latest/index.html]]**
	69	+|[[**Arbor**~>~>url:https://docs.arbor-sim.org]]
	70	+Arbor is a library for implementing performance portable network simulations of multi-compartment neuron models.**|**[[BluePyMM>>url:https://bluepymm.readthedocs.io/en/latest/index.html]]**
69	69	Model Management Python Library|**[[BluePyOpt>>url:https://bluepyopt.readthedocs.io/en/latest/]]**
70	70	BluePyOpt is an extensible framework for data-driven model parameter optimisation that wraps and standardizes several existing open-source tools.|
71	71
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100	100	A C++ / Python API for reading SONATA circuit files.|
101	101
102	102	|**[[Brain Scaffold Builder>>url:https://bsb.readthedocs.io/]]**
103		-The BSB is a framework for reconstructing and simulating multi-paradigm neuronal network models. It removes much of the repetitive work associated with writing the required code and lets you focus on the parts that matter. It helps write organized, well-parametrized and explicit code understandable and reusable by your peers.| | |
	105	+The BSB is a framework for reconstructing and simulating multi-paradigm neuronal network models. It removes much of the repetitive work associated with writing the required code and lets you focus on the parts that matter. It helps write organized, well-parametrized and explicit code understandable and reusable by your peers.|**[[InSite>>url:https://vrgrouprwth.github.io/insite/]]**
	106	+Insite provides a middleware that enables users to acquire data from NEST, Abror and TVB via the in-transit paradigm.|**[[Subcellular model building and calibration toolset>>url:https://github.com/icpm-kth]]**
	107	+Tools for data-driven building of subcellular biochemical signaling pathway models, including interoperable modules for model building, calibration, and model analysis.|
104	104
105		-
106	106	=== Neurorobotics ===
107	107
108	108	|**[[Neurorobotics Platform>>url:https://www.neurorobotics.net/Documentation/nrp/user_manual/index.html]]**