Changes for page Tools and services documentation
Last modified by graber on 2023/09/28 09:25
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... ... @@ -4,7 +4,7 @@ 4 4 === Collaboratory === 5 5 6 6 |(% style="width:30%" %)**[[Collaboratory>>url:https://wiki.ebrains.eu/bin/view/Collabs/the-collaboratory/]]** 7 -Workspaces in the Cloud for your research, development, documentation, and collaboration. 7 +Workspaces in the Cloud for your research, development, documentation, and collaboration. | 8 8 9 9 === Find data === 10 10 ... ... @@ -66,7 +66,9 @@ 66 66 BluePyEfe eases the process of reading and extracting electircal features from experimental recordings.| 67 67 68 68 |(% style="width:33%" %)**[[eFEL: Electrophys Feature Extraction Library>>url:https://efel.readthedocs.io/en/latest]]** 69 -Automatically extract eFeatures from time series data recorded from neurons, both in vitro and in silico.|(% style="width:33%" %) | 69 +Automatically extract eFeatures from time series data recorded from neurons, both in vitro and in silico.|(% style="width:33%" %)**[[Model Validation API>>https://validation.brainsimulation.eu/docs]]** 70 +The EBRAINS Model Validation Service is a web service to support the structured validation of neuroscience models. | (% style="width:33%" %)**[[Frites>>https://brainets.github.io/frites/overview/index.html]]**(%%) 71 +(% style="width:33%" %)Frtes is an open-source Python software to analyze neurophysiological data using information theoretical (IT) measures| 70 70 71 71 === Simulation === 72 72 ... ... @@ -110,10 +110,14 @@ 110 110 Insite provides a middleware that enables users to acquire data from NEST, Abror and TVB via the in-transit paradigm.|(% style="width:33%" %)**[[Subcellular model building and calibration toolset>>url:https://github.com/icpm-kth]]** 111 111 Tools for data-driven building of subcellular biochemical signaling pathway models, including interoperable modules for model building, calibration, and model analysis.| 112 112 115 +|(% style="width:33%" %)**[[Arbor GUI>>https://github.com/arbor-sim/gui]]** 116 +Arbor GUI is a comprehensive tool for building single cell models using Arbor. It strives to be self-contained, fast, and easy to use. |(% style="width:33%" %)**[[SSBtoolkit>>https://ssbtoolkit.readthedocs.io/en/latest/]]** 117 +The SSB computational toolkit was developed to easily predict classical pharmacodynamic models of drug-GPCR (class A) interactions given just as input structural information of the receptor and the ligand. |(% style="width:33%" %) |(% style="width:33%" %) | 118 + 113 113 === Neurorobotics === 114 114 115 115 |(% style="width:33%" %)**[[Neurorobotics Platform>>url:https://www.neurorobotics.net/Documentation/nrp/user_manual/index.html]]** 116 -The NRP supports closed-loop neuroscience and embodied AI by connecting brains and bodies in simulation. 122 +The NRP supports closed-loop neuroscience and embodied AI by connecting brains and bodies in simulation.| 117 117 118 118 === Medical data analytics === 119 119 ... ... @@ -129,7 +129,7 @@ 129 129 The MIP is an open-source platform enabling federated data analysis in a secure environment for centers interested in initiating or joining disease-oriented federations with the aim of analyzing large-scale distributed clinical datasets.| 130 130 131 131 |(% style="width:33%" %)**[[Human Intracerebral EEG Platform (HIP)>>url:https://hip-infrastructure.github.io/build/html/index.html]]** 132 -The HIP is a state-of-the-art open-source platform, offering integrated tools and workflows for optimized collection, storage, sharing, processing and analysis of multiscale Human intracerebral EEG data. 138 +The HIP is a state-of-the-art open-source platform, offering integrated tools and workflows for optimized collection, storage, sharing, processing and analysis of multiscale Human intracerebral EEG data. | 133 133 134 134 === Neuromorphic computing === 135 135 ... ... @@ -152,6 +152,11 @@ 152 152 A plugin for SLURM used for the co-allocation of compute and data resources.|(% style="width:33%" %)**[[Unicore>>url:https://www.unicore.eu/documentation/]]** 153 153 A set of software components for federated access to high-performance compute and data resources.| 154 154 161 +=== Sensitve Data === 162 + 163 +|(% style="width:33%" %)**[[Health Data Cloud>>https://xwiki.hdc.humanbrainproject.eu/bin/view/userguide/]]** 164 +EBRAINS Service for Sensitive Data provides a federated network of protected and audited secure Virtual Research Environments that enables users to demonstrate compliance with EU data protection law when processing human data such as digital human brain twins. The service is provided by Europe’s largest University Hospital, Charité Berlin. |(% style="width:33%" %) |(% style="width:33%" %) | 165 + 155 155 === Support === 156 156 157 157 Contact the [[EBRAINS High Level Support Team (HLST)>>https://ebrains.eu/support/]] if you have questions about our tools, services and workflows.