Changes for page Arbor

Last modified by abonard on 2025/04/10 15:11

From version 10.1
edited by abonard
on 2025/04/10 15:02
Change comment: There is no comment for this version
To version 14.1
edited by abonard
on 2025/04/10 15:02
Change comment: There is no comment for this version

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... ... @@ -49,4 +49,24 @@
49 49  **Level**: advanced(%%) **Type**: user documentation
50 50  
51 51  This tutorial will guide you through to create an ion channel with NMODL from scratch through a classic Hodgkin-Huxley ion channel model.
52 +=== [[A detailed single cell model>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_detailed.html||rel=" noopener noreferrer" target="_blank"]] ===
52 52  
54 +**Level**: advanced(%%) **Type**: user documentation
55 +
56 +In this tutorial you will learn how to build a morphology from an arbor.segment_tree. Building a morphology from an SWC file. Writing and visualizing region and locset expressions. Building a decor and discretising the morphology. Setting and overriding model and cell parameters. Running a simulation and visualising the results using a arbor.single_cell_model.
57 +=== [[Synapses in NMODL>>https://docs.arbor-sim.org/en/latest/tutorial/nmodl.html#synapses-in-nmodl||rel=" noopener noreferrer" target="_blank"]] ===
58 +
59 +**Level**: advanced(%%) **Type**: user documentation
60 +
61 +This tutorial will show and discuss the exponential synapse coming with Arbor. This tutorial builds on "How to use NMODL to extend Arbor’s repertoire of Ion Channels", so please make sure you are familiar with it before going over this tutorial.
62 +=== [[A ring network>>https://docs.arbor-sim.org/en/stable/tutorial/network_ring.html||rel=" noopener noreferrer" target="_blank"]] ===
63 +
64 +**Level**: advanced(%%) **Type**: user documentation
65 +
66 +This tutorial teaches you how to build a basic arbor.cell with a synapse site and spike generator, as well as build an arbor.recipe with a network of interconnected cells. Finally you will be able to run the simulation and extract the results.
67 +=== [[Distributed ring network (MPI)>>https://docs.arbor-sim.org/en/stable/tutorial/network_ring_mpi.html||rel=" noopener noreferrer" target="_blank"]] ===
68 +
69 +**Level**: advanced(%%) **Type**: user documentation
70 +
71 +This tutorials will teach you how to build a basic MPI aware arbor.context to run a network. This requires that you have built Arbor with MPI support enabled. Finally you will run the simulation and extract the results.
72 +