Changes for page Arbor

Last modified by abonard on 2025/04/10 15:11

From version 18.1
edited by abonard
on 2025/04/10 15:02
Change comment: There is no comment for this version
To version 14.1
edited by abonard
on 2025/04/10 15:02
Change comment: There is no comment for this version

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69 69  **Level**: advanced(%%) **Type**: user documentation
70 70  
71 71  This tutorials will teach you how to build a basic MPI aware arbor.context to run a network. This requires that you have built Arbor with MPI support enabled. Finally you will run the simulation and extract the results.
72 -=== [[A detailed single cell recipe>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_detailed_recipe.html||rel=" noopener noreferrer" target="_blank"]] ===
73 73  
74 -**Level**: advanced(%%) **Type**: user documentation
75 -
76 -This tutorial will teach you how to build an arbor.recipe., an arbor.context and
77 -create an arbor.simulation. The running the simulation and visualising the results.
78 -=== [[Spike Timing-dependent Plasticity Curve>>https://docs.arbor-sim.org/en/stable/tutorial/calcium_stdp_curve.html||rel=" noopener noreferrer" target="_blank"]] ===
79 -
80 -**Level**: advanced(%%) **Type**: user documentation
81 -
82 -We will focus on implementing a stochastic differential equation (SDE) in Arbor’s NMODL dialect and examine the mechanism code in the Arbor repository.
83 -=== [[Two cells connected via a gap junction>>https://docs.arbor-sim.org/en/stable/tutorial/network_two_cells_gap_junctions.html||rel=" noopener noreferrer" target="_blank"]] ===
84 -
85 -**Level**: advanced(%%) **Type**: user documentation
86 -
87 -You will be able to learn how to create a simulation recipe for two cells.
88 -How to place probes, run the simulation and extract the results.
89 -Finally you will able to add a gap junction connection.
90 -=== [[Brunel network>>https://docs.arbor-sim.org/en/latest/tutorial/brunel.html||rel=" noopener noreferrer" target="_blank"]] ===
91 -
92 -**Level**: advanced(%%) **Type**: user documentation
93 -
94 -In this tutorial we will follow the description of the ring network to build our recipe. Finally you will be able to build the network, run the simulation, and record the spikes. If interested you can go on to learn how to visualise the raster plot of the entire network and a few selected cells, and the peristimulus time histogram (PSTH) of the entire network.
95 -