Summary

• Page properties (1 modified, 0 added, 0 removed)

Details

Page properties

Content

...	...	@@ -59,42 +59,4 @@
59	59	**Level**: advanced(%%) **Type**: user documentation
60	60
61	61	This tutorial will show and discuss the exponential synapse coming with Arbor. This tutorial builds on "How to use NMODL to extend Arbor’s repertoire of Ion Channels", so please make sure you are familiar with it before going over this tutorial.
62		-=== [[A ring network>>https://docs.arbor-sim.org/en/stable/tutorial/network_ring.html||rel=" noopener noreferrer" target="_blank"]] ===
63	63
64		-**Level**: advanced(%%) **Type**: user documentation
65		-
66		-This tutorial teaches you how to build a basic arbor.cell with a synapse site and spike generator, as well as build an arbor.recipe with a network of interconnected cells. Finally you will be able to run the simulation and extract the results.
67		-=== [[Distributed ring network (MPI)>>https://docs.arbor-sim.org/en/stable/tutorial/network_ring_mpi.html||rel=" noopener noreferrer" target="_blank"]] ===
68		-
69		-**Level**: advanced(%%) **Type**: user documentation
70		-
71		-This tutorials will teach you how to build a basic MPI aware arbor.context to run a network. This requires that you have built Arbor with MPI support enabled. Finally you will run the simulation and extract the results.
72		-=== [[A detailed single cell recipe>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_detailed_recipe.html||rel=" noopener noreferrer" target="_blank"]] ===
73		-
74		-**Level**: advanced(%%) **Type**: user documentation
75		-
76		-This tutorial will teach you how to build an arbor.recipe., an arbor.context and
77		-create an arbor.simulation. The running the simulation and visualising the results.
78		-=== [[Spike Timing-dependent Plasticity Curve>>https://docs.arbor-sim.org/en/stable/tutorial/calcium_stdp_curve.html||rel=" noopener noreferrer" target="_blank"]] ===
79		-
80		-**Level**: advanced(%%) **Type**: user documentation
81		-
82		-We will focus on implementing a stochastic differential equation (SDE) in Arbor’s NMODL dialect and examine the mechanism code in the Arbor repository.
83		-=== [[Two cells connected via a gap junction>>https://docs.arbor-sim.org/en/stable/tutorial/network_two_cells_gap_junctions.html||rel=" noopener noreferrer" target="_blank"]] ===
84		-
85		-**Level**: advanced(%%) **Type**: user documentation
86		-
87		-You will be able to learn how to create a simulation recipe for two cells.
88		-How to place probes, run the simulation and extract the results.
89		-Finally you will able to add a gap junction connection.
90		-=== [[Brunel network>>https://docs.arbor-sim.org/en/latest/tutorial/brunel.html||rel=" noopener noreferrer" target="_blank"]] ===
91		-
92		-**Level**: advanced(%%) **Type**: user documentation
93		-
94		-In this tutorial we will follow the description of the ring network to build our recipe. Finally you will be able to build the network, run the simulation, and record the spikes. If interested you can go on to learn how to visualise the raster plot of the entire network and a few selected cells, and the peristimulus time histogram (PSTH) of the entire network.
95		-=== [[Optimisation of a Neocortical Layer 5 Pyramidal Cell in Arbor>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/l5pc/L5PC_arbor.ipynb||rel=" noopener noreferrer" target="_blank"]] ===
96		-
97		-**Level**: advanced(%%) **Type**: interactive tutorial
98		-
99		-This notebook shows you how to optimise the maximal conductance of Neocortical Layer 5 Pyramidal Cell as used in Markram et al. 2015 using Arbor as the simulator.
100		-