Changes for page Arbor

Last modified by abonard on 2025/04/10 15:11

From version 3.1
edited by abonard
on 2025/04/10 15:02
Change comment: There is no comment for this version
To version 7.1
edited by abonard
on 2025/04/10 15:02
Change comment: There is no comment for this version

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2 2  
3 3  * ((( ==== **[[Beginner >>||anchor = "HBeginner-1"]]** ==== )))
4 4  
5 +* ((( ==== **[[Advanced >>||anchor = "HAdvanced-1"]]** ==== )))
6 +
5 5  === **Beginner** ===
6 6  
7 7  === [[Arbor Tutorial Index – from Cells to Networks>>https://docs.arbor-sim.org/en/latest/tutorial/index.html||rel=" noopener noreferrer" target="_blank"]] ===
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8 8  
9 9  **Level**: beginner(%%) **Type**: interactive tutorial
10 10  
13 +=== [[A simple single cell model>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_model.html||rel=" noopener noreferrer" target="_blank"]] ===
11 11  
15 +**Level**: beginner(%%) **Type**: user documentation
16 +
17 +This tutorial will give you an intro into building a morphology from an arbor.segment_tree, region and locset expressions and into decors and cell decorations.
18 +Furthermore will you learn about building an arbor.cable_cell object, arbor.single_cell_model object as well as running a simulation and visualising the results.
19 +=== **Advanced** ===
20 +
21 +=== [[GPU and profiling>>https://docs.arbor-sim.org/en/stable/tutorial/network_ring_gpu.html||rel=" noopener noreferrer" target="_blank"]] ===
22 +
23 +**Level**: advanced(%%) **Type**: user documentation
24 +
25 +This tutorial will show you how to build an arbor.context using a GPU. This requires that you have built Arbor with GPU support enabled. Further you will learn to build an arbor.domain_decomposition and provide an arbor.partition_hint. Finally you will profile an Arbor simulation using arbor.meter_manager.
26 +=== [[A single cell model from the Allen Brain Atlas>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_allen.html||rel=" noopener noreferrer" target="_blank"]] ===
27 +
28 +**Level**: advanced(%%) **Type**: user documentation
29 +
30 +This tutorial will teach you how to take a model from the Allen Brain Atlas,
31 +load a morphology from an swc file and a parameter fit file and apply it to an arbor.decor. It will further show you how to build an arbor.cable_cell representative of the cell in the model and an arbor.recipe reflective of the cell stimulation in the model. Finally you will be running a simulation and visualising these results.
32 +=== [[A simple dendrite>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_cable.html||rel=" noopener noreferrer" target="_blank"]] ===
33 +
34 +**Level**: advanced(%%) **Type**: user documentation
35 +
36 +In this tutorial you will learn how to create a simulation recipe of a single dendrite. How to place probes on the morphology and running the simulation and extracting the results and finally investigate the influence of control volume policies.
37 +