Attention: Due to an upgrade beginning on Friday, the 22nd August 2025, any new collabs, groups and any changes to teams will not be kept beyond the weekend. User creation will also be disabled during this time. The actual upgrade will take place on Wednesday, 27th August. On that day, any service requiring a Keycloak login will be unavailable for the duration of the upgrade. Thank you for your understanding as we complete this important work.


Changes for page Arbor

Last modified by abonard on 2025/06/13 16:05

From version 38.1
edited by abonard
on 2025/04/10 15:11
Change comment: There is no comment for this version
To version 20.1
edited by abonard
on 2025/04/10 15:02
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -97,4 +97,9 @@
97 97  **Level**: advanced(%%) **Type**: interactive tutorial
98 98  
99 99  This notebook shows you how to optimise the maximal conductance of Neocortical Layer 5 Pyramidal Cell as used in Markram et al. 2015 using Arbor as the simulator.
100 +=== [[Extracellular signals (LFPykit)>>https://docs.arbor-sim.org/en/stable/tutorial/probe_lfpykit.html||rel=" noopener noreferrer" target="_blank"]] ===
100 100  
102 +**Level**: advanced(%%) **Type**: user documentation
103 +
104 +This tutorial will show you how to record transmembrane currents using arbor.cable_probe_total_current_cell and how to record stimulus currents using arbor.cable_probe_stimulus_current_cell. Later we will be using the arbor.place_pwlin API to map recorded transmembrane currents to extracellular potentials by deriving Arbor specific classes from LFPykit’s lfpykit.LineSourcePotential and lfpykit.CellGeometry.
105 +