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Changes for page Arbor

Last modified by abonard on 2025/09/16 10:47
From version 64.1
edited by abonard
on 2025/06/03 10:59
Change comment: There is no comment for this version
To version 3.1
edited by abonard
on 2025/04/10 15:02
Change comment: There is no comment for this version

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2 2  
3 3  * ((( ==== **[[Beginner >>||anchor = "HBeginner-1"]]** ==== )))
4 4  
5 -* ((( ==== **[[Advanced >>||anchor = "HAdvanced-1"]]** ==== )))
6 -
7 7  === **Beginner** ===
8 8  
9 9  === [[Arbor Tutorial Index – from Cells to Networks>>https://docs.arbor-sim.org/en/latest/tutorial/index.html||rel=" noopener noreferrer" target="_blank"]] ===
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10 10  
11 11  **Level**: beginner(%%) **Type**: interactive tutorial
12 12  
13 -=== [[A simple single cell model>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_model.html||rel=" noopener noreferrer" target="_blank"]] ===
14 14  
15 -**Level**: beginner(%%) **Type**: user documentation
16 -
17 -This tutorial will give you an intro into building a morphology from an arbor.segment_tree, region and locset expressions and into decors and cell decorations.
18 -Furthermore will you learn about building an arbor.cable_cell object, arbor.single_cell_model object as well as running a simulation and visualising the results.
19 -=== **Advanced** ===
20 -
21 -=== [[GPU and profiling>>https://docs.arbor-sim.org/en/stable/tutorial/network_ring_gpu.html||rel=" noopener noreferrer" target="_blank"]] ===
22 -
23 -**Level**: advanced(%%) **Type**: user documentation
24 -
25 -This tutorial will show you how to build an arbor.context using a GPU. This requires that you have built Arbor with GPU support enabled. Further you will learn to build an arbor.domain_decomposition and provide an arbor.partition_hint. Finally you will profile an Arbor simulation using arbor.meter_manager.
26 -=== [[A single cell model from the Allen Brain Atlas>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_allen.html||rel=" noopener noreferrer" target="_blank"]] ===
27 -
28 -**Level**: advanced(%%) **Type**: user documentation
29 -
30 -This tutorial will teach you how to take a model from the Allen Brain Atlas,
31 -load a morphology from an swc file and a parameter fit file and apply it to an arbor.decor. It will further show you how to build an arbor.cable_cell representative of the cell in the model and an arbor.recipe reflective of the cell stimulation in the model. Finally you will be running a simulation and visualising these results.
32 -=== [[A simple dendrite>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_cable.html||rel=" noopener noreferrer" target="_blank"]] ===
33 -
34 -**Level**: advanced(%%) **Type**: user documentation
35 -
36 -In this tutorial you will learn how to create a simulation recipe of a single dendrite. How to place probes on the morphology and running the simulation and extracting the results and finally investigate the influence of control volume policies.
37 -