Attention: Due to an upgrade beginning on Friday, the 22nd August 2025, any new collabs, groups and any changes to teams will not be kept beyond the weekend. User creation will also be disabled during this time. The actual upgrade will take place on Wednesday, 27th August. On that day, any service requiring a Keycloak login will be unavailable for the duration of the upgrade. Thank you for your understanding as we complete this important work.

The Wiki service will be temporarily unavailable for scheduled maintenance on Friday, August 22nd, 2025, starting at 12:30 CEST up to 1H.

Following the system restart, the Collaboration and Group creation features will be temporarily disabled and will return HTTP 503 Service Unavailable errors until further notice.


Changes for page Arbor

Last modified by abonard on 2025/06/13 16:05
From version 67.1
edited by abonard
on 2025/06/03 10:59
Change comment: There is no comment for this version
To version 87.1
edited by abonard
on 2025/06/13 16:05
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -49,4 +49,9 @@
49 49  **Level**: advanced(%%) **Type**: user documentation
50 50  
51 51  This tutorial will guide you through to create an ion channel with NMODL from scratch through a classic Hodgkin-Huxley ion channel model.
52 +=== [[A detailed single cell model>>https://docs.arbor-sim.org/en/stable/tutorial/single_cell_detailed.html||rel=" noopener noreferrer" target="_blank"]] ===
52 52  
54 +**Level**: advanced(%%) **Type**: user documentation
55 +
56 +In this tutorial you will learn how to build a morphology from an arbor.segment_tree. Building a morphology from an SWC file. Writing and visualizing region and locset expressions. Building a decor and discretising the morphology. Setting and overriding model and cell parameters. Running a simulation and visualising the results using a arbor.single_cell_model.
57 +