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Changes for page BluePyOpt

Last modified by abonard on 2025/06/13 16:05
From version 11.1
edited by abonard
on 2025/04/10 15:03
Change comment: There is no comment for this version
To version 13.1
edited by abonard
on 2025/04/10 15:03
Change comment: There is no comment for this version

Summary

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57 57  **Level**: advanced(%%) **Type**: interactive tutorial
58 58  
59 59  This notebook shows you how to optimise the maximal conductance of Neocortical Layer 5 Pyramidal Cell as used in Markram et al. 2015.
60 +=== [[Optimisation of a Neocortical Layer 5 Pyramidal Cell in Arbor>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/l5pc/L5PC_arbor.ipynb||rel=" noopener noreferrer" target="_blank"]] ===
60 60  
62 +**Level**: advanced(%%) **Type**: interactive tutorial
63 +
64 +This notebook shows you how to optimise the maximal conductance of Neocortical Layer 5 Pyramidal Cell as used in Markram et al. 2015 using Arbor as the simulator.
65 +=== [[Simulating optimized cell models in Arbor and cross-validation with Neuron>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/l5pc/l5pc_validate_neuron_arbor.ipynb||rel=" noopener noreferrer" target="_blank"]] ===
66 +
67 +**Level**: advanced(%%) **Type**: interactive tutorial
68 +
69 +This notebook demonstrates how to run a simulation of a simple single compartmental cell with fixed/optimized parameters in Arbor. We follow the standard BluePyOpt flow of setting up an electrophysiological experiment and export the cell model to a mixed JSON/ACC-format. We then cross-validate voltage traces obtained with Arbor with those from a Neuron simulation.
70 +