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* ((( ==== **[[Intermediate >>||anchor = "HIntermediate-1"]]** ==== ))) |
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-* ((( ==== **[[Advanced >>||anchor = "HAdvanced-1"]]** ==== ))) |
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=== **Beginner** === |
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=== [[Creating a simple cell optimisation>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/simplecell/simplecell.ipynb||rel=" noopener noreferrer" target="_blank"]] === |
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**Level**: intermediate(%%) **Type**: interactive tutorial |
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This notebook will demonstrate how to instantiate a cell model and evaluator that include local field potential (LFP) computation and its recording using a simulated multi electrode array (MEA). |
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-=== [[Exporting a cell in the neuroml format and running it>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/neuroml/neuroml.ipynb||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: intermediate(%%) **Type**: interactive tutorial |
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-In this tutorial we will go over how to export a cell to neuroml, create a LEMS simulation able to run the neuroml cell and then how to run the simulation. |
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-=== [[Tsodyks-Markram model of short-term synaptic plasticity>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/tsodyksmarkramstp/tsodyksmarkramstp.ipynb||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: intermediate(%%) **Type**: interactive tutorial |
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-In this notebook we demonstrate how to fit the parameters of the Tsodyks-Markram model to a given in vitro somatic recording. The in vitro trace used here shows a typical L5TTPC-L5TTPC depressing connection, kindly provided by Rodrigo Perin (EPFL). |
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-=== [[Optimization of burst and tonic firing in thalamo-cortical neurons>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/thalamocortical-cell/thalamocortical-cell_opt.ipynb||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: intermediate(%%) **Type**: interactive tutorial |
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-In this tutorial we will go over how to set up the cell model and the cell evaluator, run an optimisation and how to analyse optimisation results. |
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-=== **Advanced** === |
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-=== [[Optimisation of a Neocortical Layer 5 Pyramidal Cell>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/l5pc/L5PC.ipynb||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: advanced(%%) **Type**: interactive tutorial |
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-This notebook shows you how to optimise the maximal conductance of Neocortical Layer 5 Pyramidal Cell as used in Markram et al. 2015. |
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