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Changes for page BluePyOpt

Last modified by abonard on 2025/06/13 16:05

From version 47.1
edited by abonard
on 2025/06/13 16:05
Change comment: There is no comment for this version
To version 52.1
edited by abonard
on 2025/06/13 16:05
Change comment: There is no comment for this version

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2 2  
3 3  * ((( ==== **[[Beginner >>||anchor = "HBeginner-1"]]** ==== )))
4 4  
5 +* ((( ==== **[[Intermediate >>||anchor = "HIntermediate-1"]]** ==== )))
6 +
5 5  === **Beginner** ===
6 6  
7 7  === [[Creating a simple cell optimisation>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/simplecell/simplecell.ipynb||rel=" noopener noreferrer" target="_blank"]] ===
... ... @@ -9,4 +9,31 @@
9 9  **Level**: beginner(%%) **Type**: interactive tutorial
10 10  
11 11  This notebook will explain how to set up an optimisation of simple single compartmental cell with two free parameters that need to be optimised. As this optimisation is for example purpose only, no real experimental data is used in this notebook.
14 +=== [[Optimisation using the CMA evolutionary strategy>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/cma_strategy/cma.ipynb||rel=" noopener noreferrer" target="_blank"]] ===
12 12  
16 +**Level**: beginner(%%) **Type**: interactive tutorial
17 +
18 +This notebook will explain how to optimise a model using the covariance matrix adaptation (CMA) optimisation strategy. BluePyOpt includes two flavors of CMA: a single objective one and a hybrid single/multi objective one.
19 +=== [[Optimising synaptic parameters>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/expsyn/ExpSyn.ipynb||rel=" noopener noreferrer" target="_blank"]] ===
20 +
21 +**Level**: beginner(%%) **Type**: interactive tutorial
22 +
23 +This notebook shows how the parameters of a NEURON point process (in this case a synapse), can be optimised using BluePyOpt.
24 +=== **Intermediate** ===
25 +
26 +=== [[Creating an optimisation with meta parameters>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/metaparameters/metaparameters.ipynb||rel=" noopener noreferrer" target="_blank"]] ===
27 +
28 +**Level**: intermediate(%%) **Type**: interactive tutorial
29 +
30 +This notebook will explain how to set up an optimisation that uses metaparameters (parameters that control other parameters)
31 +=== [[Setup of a cell model with multi electrode simulation for local field potential recording>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/l5pc_lfpy/L5PC_LFPy.ipynb||rel=" noopener noreferrer" target="_blank"]] ===
32 +
33 +**Level**: intermediate(%%) **Type**: interactive tutorial
34 +
35 +This notebook will demonstrate how to instantiate a cell model and evaluator that include local field potential (LFP) computation and its recording using a simulated multi electrode array (MEA).
36 +=== [[Exporting a cell in the neuroml format and running it>>https://github.com/BlueBrain/BluePyOpt/blob/master/examples/neuroml/neuroml.ipynb||rel=" noopener noreferrer" target="_blank"]] ===
37 +
38 +**Level**: intermediate(%%) **Type**: interactive tutorial
39 +
40 +In this tutorial we will go over how to export a cell to neuroml, create a LEMS simulation able to run the neuroml cell and then how to run the simulation.
41 +