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**Level**: advanced(%%) **Type**: user documentation |
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We will go over how to create an "unoptimized" model, set up a current clamp experiment on this model, configure a MultipleRunFitter to do a "run fitness" optimization, load the Experimental Data into the iclamp Run Fitness Generator, specify the parameters that will be adjusted and finally perform the optimization. |
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-=== [[Reaction-Diffusion – Hodgkin-Huxley using rxd>>https://neuron.yale.edu/neuron/docs/hodgkin-huxley-using-rxd||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: advanced(%%) **Type**: interactive tutorial |
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-In this tutorial you will learn how to set the proper parameters for the Hodgkin–Huxley model in NEURON. |
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-=== [[Using the CellBuilder – Creating a stylised ("stick-figure") model cell>>https://neuron.yale.edu/neuron/static/docs/cbtut/stylized/outline.html||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: advanced(%%) **Type**: - |
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-Learn how to build an extremely simplified model of a pyramidal cell. |
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-=== [[Ball and Stick model part 2>>https://neuron.yale.edu/neuron/docs/ball-and-stick-model-part-2||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: advanced(%%) **Type**: user documentation |
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-=== [[Reaction-Diffusion Example – Circadian rhythm>>https://neuron.yale.edu/neuron/docs/example-circadian-rhythm||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: advanced(%%) **Type**: user documentation |
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-Here we develop a NEURON implementation of the Leloup-Goldbeter model for circadian rhythms in Drosophila. In this example NEURON's h library and its standard run system are being used as well as matplotlib to plot concentrations of circadian proteins over time. |
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-=== [[Segmenting a simulation of a model cell – 3. Run a segmented simulation and save its results>>https://neuron.yale.edu/neuron/docs/3-run-segmented-simulation-and-save-its-results||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: advanced(%%) **Type**: user documentation |
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-=== [[ModelView: Compact display of parameters for NEURON models.>>https://neuron.yale.edu/neuron/static/papers/mview/modelviewhbp2004.html||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: advanced(%%) **Type**: user documentation |
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-This example demonstrates how ModelView can explore a NEURON model. |
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-=== [[Segmenting a simulation of a model network – 3. Run a segmented simulation and save its results>>https://neuron.yale.edu/neuron/docs/3-run-segmented-simulation-and-save-its-results-0||rel=" noopener noreferrer" target="_blank"]] === |
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-**Level**: advanced(%%) **Type**: user documentation |
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