Changes for page Neuron

Last modified by abonard on 2025/04/10 15:17

From version 111.1
edited by abonard
on 2025/04/10 15:16
Change comment: There is no comment for this version
To version 117.1
edited by abonard
on 2025/04/10 15:17
Change comment: There is no comment for this version

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238 238  **Level**: advanced(%%) **Type**: user documentation
239 239  
240 240  We will look into how to bring up a Multiple Run Fitter, load the Experimental Data into the Multiple Run Fitter, specify the function we want to optimize, specify the parameters that will be adjusted, specify the criteria we want the function to satisfy and finally perform the optimization.
241 +=== [[Ball and Stick model part 4>>https://neuron.yale.edu/neuron/docs/ball-and-stick-model-part-4||rel=" noopener noreferrer" target="_blank"]] ===
241 241  
243 +**Level**: advanced(%%) **Type**: user documentation
244 +
245 +=== [[Reaction-Diffusion>>https://neuron.yale.edu/neuron/docs/reaction-diffusion||rel=" noopener noreferrer" target="_blank"]] ===
246 +
247 +**Level**: advanced(%%) **Type**: interactive tutorial
248 +
249 +In this tutorial you will learn how to implement cell signalling function in the reaction-diffusion system by characterising your problems by the answers to three questions: (1) Where do the dynamics occur, (2) Who are the actors, and (3) How do they interact?
250 +=== [[Creating a stylized ("stick figure") model cell>>https://neuron.yale.edu/neuron/static/docs/cbtut/stylized/outline.html||rel=" noopener noreferrer" target="_blank"]] ===
251 +
252 +**Level**: advanced(%%) **Type**: user documentation
253 +
254 +Our goal in this tutorial is to build an extremely simplified model of a pyramidal cell using the CellBuilder, a powerful and convenient tool for constructing and managing models of individual neurons. We will be looking into setting up model topology, grouping sections with shared properties into subsets, assigning geometric properties to subsets or individual sections, and specifying a discretization strategy, as well as assigning biophysical properties to subsets or individual sections.
255 +=== [[Randomness in NEURON models– Source code that demonstrates the problem>>https://neuron.yale.edu/neuron/docs/source-code-demonstrates-problem||rel=" noopener noreferrer" target="_blank"]] ===
256 +
257 +**Level**: advanced(%%) **Type**: user documentation
258 +
259 +The tutorial will show you how to declare important constants (model parameters and simulation parameters), load files that other stuff will depend on, create the model itself (just a collection of cells that spike at random times), specify instrumentation (in this case, recording of spike times), specify simulation control and execute one or more simulations with various model parameters in the source code.
260 +=== [[Using the Channel Builder – Creating a model of stochastic channel gating>>https://neuron.yale.edu/neuron/static/docs/chanlbild/stochastic/outline.html||rel=" noopener noreferrer" target="_blank"]] ===
261 +
262 +**Level**: advanced(%%) **Type**: interactive tutorial
263 +
264 +Given a Channel Builder that implements a deterministic channel specified by a kinetic scheme, we create a new one that implements stochastic gating.
265 +=== [[Randomness in NEURON models - How to generate independent random spike streams>>https://neuron.yale.edu/neuron/docs/how-generate-independent-random-spike-streams||rel=" noopener noreferrer" target="_blank"]] ===
266 +
267 +**Level**: advanced(%%) **Type**: user documentation
268 +
269 +Learn how to generate random spike streams with the use of NetStim.
270 +