Changes for page Neuron

Last modified by abonard on 2025/04/10 15:17

From version 114.1
edited by abonard
on 2025/04/10 15:16
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To version 120.1
edited by abonard
on 2025/04/10 15:17
Change comment: There is no comment for this version

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252 252  **Level**: advanced(%%) **Type**: user documentation
253 253  
254 254  Our goal in this tutorial is to build an extremely simplified model of a pyramidal cell using the CellBuilder, a powerful and convenient tool for constructing and managing models of individual neurons. We will be looking into setting up model topology, grouping sections with shared properties into subsets, assigning geometric properties to subsets or individual sections, and specifying a discretization strategy, as well as assigning biophysical properties to subsets or individual sections.
255 +=== [[Randomness in NEURON models– Source code that demonstrates the problem>>https://neuron.yale.edu/neuron/docs/source-code-demonstrates-problem||rel=" noopener noreferrer" target="_blank"]] ===
255 255  
257 +**Level**: advanced(%%) **Type**: user documentation
258 +
259 +The tutorial will show you how to declare important constants (model parameters and simulation parameters), load files that other stuff will depend on, create the model itself (just a collection of cells that spike at random times), specify instrumentation (in this case, recording of spike times), specify simulation control and execute one or more simulations with various model parameters in the source code.
260 +=== [[Using the Channel Builder – Creating a model of stochastic channel gating>>https://neuron.yale.edu/neuron/static/docs/chanlbild/stochastic/outline.html||rel=" noopener noreferrer" target="_blank"]] ===
261 +
262 +**Level**: advanced(%%) **Type**: interactive tutorial
263 +
264 +Given a Channel Builder that implements a deterministic channel specified by a kinetic scheme, we create a new one that implements stochastic gating.
265 +=== [[Randomness in NEURON models - How to generate independent random spike streams>>https://neuron.yale.edu/neuron/docs/how-generate-independent-random-spike-streams||rel=" noopener noreferrer" target="_blank"]] ===
266 +
267 +**Level**: advanced(%%) **Type**: user documentation
268 +
269 +Learn how to generate random spike streams with the use of NetStim.
270 +=== [[Using Import3D – Reading a morphometric data file and converting it to a NEURON model>>https://neuron.yale.edu/neuron/docs/import3d/read_data||rel=" noopener noreferrer" target="_blank"]] ===
271 +
272 +**Level**: advanced(%%) **Type**: user documentation
273 +
274 +Import3D tool can be used to translate common varieties of cellular morphometric data into a CellBuilder that specifies the anatomical properties of a model neuron. This Tutorial will guide you through bringing up an Import3d tool, then specifying a file to be read and finally export the data as a NEURON model.
275 +=== [[Reaction-Diffusion – Varying initial concentrations and parameters>>https://neuron.yale.edu/neuron/docs/reaction-diffusion-varying-initial-concentrations-and-parameters||rel=" noopener noreferrer" target="_blank"]] ===
276 +
277 +**Level**: advanced(%%) **Type**: interactive tutorial
278 +
279 +This tutorial will show you how to manipulate the rxd.Species attribute to see how the choice of initial conditions affects the dynamics.
280 +=== [[Using the CellBuilder – Managing a model cell with complex anatomy>>https://neuron.yale.edu/neuron/static/docs/cbtut/pt3d/outline.html||rel=" noopener noreferrer" target="_blank"]] ===
281 +
282 +**Level**: advanced(%%) **Type**: interactive tutorial
283 +
284 +We use the CellBuilder to specify the spatial grid (nseg) and biophysical properties of a model based on detailed morphometric data.
285 +