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**Level**: advanced(%%) **Type**: user documentation |
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The tutorial will show you how to declare important constants (model parameters and simulation parameters), load files that other stuff will depend on, create the model itself (just a collection of cells that spike at random times), specify instrumentation (in this case, recording of spike times), specify simulation control and execute one or more simulations with various model parameters in the source code. |
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+=== [[Using the Channel Builder – Creating a model of stochastic channel gating>>https://neuron.yale.edu/neuron/static/docs/chanlbild/stochastic/outline.html||rel=" noopener noreferrer" target="_blank"]] === |
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+**Level**: advanced(%%) **Type**: interactive tutorial |
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+Given a Channel Builder that implements a deterministic channel specified by a kinetic scheme, we create a new one that implements stochastic gating. |
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+=== [[Randomness in NEURON models - How to generate independent random spike streams>>https://neuron.yale.edu/neuron/docs/how-generate-independent-random-spike-streams||rel=" noopener noreferrer" target="_blank"]] === |
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+**Level**: advanced(%%) **Type**: user documentation |
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+Learn how to generate random spike streams with the use of NetStim. |
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+=== [[Using Import3D – Reading a morphometric data file and converting it to a NEURON model>>https://neuron.yale.edu/neuron/docs/import3d/read_data||rel=" noopener noreferrer" target="_blank"]] === |
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+**Level**: advanced(%%) **Type**: user documentation |
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+Import3D tool can be used to translate common varieties of cellular morphometric data into a CellBuilder that specifies the anatomical properties of a model neuron. This Tutorial will guide you through bringing up an Import3d tool, then specifying a file to be read and finally export the data as a NEURON model. |
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+=== [[Reaction-Diffusion – Varying initial concentrations and parameters>>https://neuron.yale.edu/neuron/docs/reaction-diffusion-varying-initial-concentrations-and-parameters||rel=" noopener noreferrer" target="_blank"]] === |
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+**Level**: advanced(%%) **Type**: interactive tutorial |
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+This tutorial will show you how to manipulate the rxd.Species attribute to see how the choice of initial conditions affects the dynamics. |
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+=== [[Using the CellBuilder – Managing a model cell with complex anatomy>>https://neuron.yale.edu/neuron/static/docs/cbtut/pt3d/outline.html||rel=" noopener noreferrer" target="_blank"]] === |
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+**Level**: advanced(%%) **Type**: interactive tutorial |
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+We use the CellBuilder to specify the spatial grid (nseg) and biophysical properties of a model based on detailed morphometric data. |
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+=== [[Using NEURON's Optimization Tools>>https://neuron.yale.edu/neuron/static/docs/optimiz/main.html||rel=" noopener noreferrer" target="_blank"]] === |
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+**Level**: advanced(%%) **Type**: user documentation |
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+This collection of tutorials shows how to use NEURON's optimization tools. Before working through these tutorials, most readers should probably examine the on-line "Introduction to Optimization" http://neos-guide.org/content/optimization-introduction. |
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