| ... |
... |
@@ -148,32 +148,4 @@ |
| 148 |
148 |
|
| 149 |
149 |
**Level**: advanced(%%) **Type**: user documentation |
| 150 |
150 |
|
| 151 |
|
-=== [[Scripting NEURON basics>>https://neuron.yale.edu/neuron/docs/scripting-neuron-basics||rel=" noopener noreferrer" target="_blank"]] === |
| 152 |
152 |
|
| 153 |
|
-**Level**: advanced(%%) **Type**: user documentation |
| 154 |
|
- |
| 155 |
|
-The objectives of this part of the tutorial are to get familiar with basic operations of NEURON using Python. In this worksheet we will: Create a passive cell membrane in NEURON. Create a synaptic stimulus onto the neuron. Modify parameters of the membrane and stimulus. Visualize results with bokeh. |
| 156 |
|
-=== [[Reaction-Diffusion – Thresholds>>https://neuron.yale.edu/neuron/docs/reaction-diffusion-thresholds||rel=" noopener noreferrer" target="_blank"]] === |
| 157 |
|
- |
| 158 |
|
-**Level**: advanced(%%) **Type**: interactive tutorial |
| 159 |
|
- |
| 160 |
|
-Learn how to scale reaction rates by a function of the form f(x) for suitably chosen a and m to approximately threshold them by a concentration. |
| 161 |
|
-=== [[Randomness in NEURON models>>https://neuron.yale.edu/neuron/docs/randomness-neuron-models||rel=" noopener noreferrer" target="_blank"]] === |
| 162 |
|
- |
| 163 |
|
-**Level**: advanced(%%) **Type**: user documentation |
| 164 |
|
- |
| 165 |
|
-We will touch upon the following subjects in this tutorial: |
| 166 |
|
-How to create model specification code that employs randomization to avoid undesired correlations between parameters, and to produce a model cell or network that has the same architecture and biophysical properties, and generates the same simulation results regardless of whether it is run on serial or parallel hardware. |
| 167 |
|
-How to generate spike streams or other signals that fluctuate in ways that are statistically independent of each other. |
| 168 |
|
-=== [[Using the CellBuilder– Specifying parameterized variation of biophysical properties>>https://neuron.yale.edu/neuron/static/docs/cbtut/parameterized/outline.html||rel=" noopener noreferrer" target="_blank"]] === |
| 169 |
|
- |
| 170 |
|
-**Level**: advanced(%%) **Type**: interactive tutorial |
| 171 |
|
- |
| 172 |
|
-How to make one or more biophysical properties vary systematically with position in space. |
| 173 |
|
-=== [[Using Import3D – An introduction>>https://neuron.yale.edu/neuron/docs/import3d||rel=" noopener noreferrer" target="_blank"]] === |
| 174 |
|
- |
| 175 |
|
-**Level**: advanced(%%) **Type**: user documentation |
| 176 |
|
- |
| 177 |
|
-Import3D tool can be used to translate common varieties of cellular morphometric data into a CellBuilder that specifies the anatomical properties of a model neuron. This Tutorial will guide you in reading a morphometric data file and converting it to a NEURON model as well as |
| 178 |
|
-exploring morphometric data and fixing problems. |
| 179 |
|
- |
