| ... | ... | @@ -102,4 +102,55 @@ | 
              
                    | 102 | 102 | **Level**: advanced(%%)  **Type**: user documentation | 
              
                    | 103 | 103 |  | 
              
                    | 104 | 104 | How to deal with simulations that generate a lot of data that must be saved? We will showcase different approaches. | 
              
                    |  | 105 | +=== [[Using the Channel Builder – Creating a channel from an HH-style specification>>https://neuron.yale.edu/neuron/static/docs/chanlbild/hhstyle/outline.html||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    | 105 | 105 |  | 
              
                    |  | 107 | +**Level**: advanced(%%)  **Type**: interactive tutorial | 
              
                    |  | 108 | + | 
              
                    |  | 109 | +Our goal is to implement a new voltage-gated macroscopic current whose properties are described by HH-style equations. | 
              
                    |  | 110 | +=== [[Using the Channel Builder – Creating a channel from a kinetic scheme specification>>https://neuron.yale.edu/neuron/static/docs/chanlbild/kinetic/outline.html||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    |  | 111 | + | 
              
                    |  | 112 | +**Level**: advanced(%%)  **Type**: interactive tutorial | 
              
                    |  | 113 | + | 
              
                    |  | 114 | +Here we will implement a new voltage-gated macroscopic current whose properties are described by a family of chemical reactions. | 
              
                    |  | 115 | +=== [[Randomness in NEURON models– Source code that demonstrates the solution>>https://neuron.yale.edu/neuron/docs/source-code-demonstrates-solution||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    |  | 116 | + | 
              
                    |  | 117 | +**Level**: advanced(%%)  **Type**: user documentation | 
              
                    |  | 118 | + | 
              
                    |  | 119 | +=== [[Using the Network Builder – Introduction to Network Construction>>https://neuron.yale.edu/neuron/static/docs/netbuild/intro.html||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    |  | 120 | + | 
              
                    |  | 121 | +**Level**: advanced(%%)  **Type**: user documentation | 
              
                    |  | 122 | + | 
              
                    |  | 123 | +=== [[Python introduction>>https://neuron.yale.edu/neuron/docs/python-introduction||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    |  | 124 | + | 
              
                    |  | 125 | +**Level**: advanced(%%)  **Type**: user documentation | 
              
                    |  | 126 | + | 
              
                    |  | 127 | +This page provides a brief introduction to Python syntax, Variables, Lists and Dicts, For loops and iterators, Functions, Classes, Importing modules, Writing and reading files with Pickling. | 
              
                    |  | 128 | +=== [[Reaction-Diffusion Example – RxD with MOD files>>https://neuron.yale.edu/neuron/docs/rxd-mod-files||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    |  | 129 | + | 
              
                    |  | 130 | +**Level**: advanced(%%)  **Type**: user documentation | 
              
                    |  | 131 | + | 
              
                    |  | 132 | +NEURON's reaction-diffusion infrastructure can be used to readily allow intracellular concentrations to respond to currents generated in MOD files. This example shows you a simple model with just a single point soma, of length and diameter 10 microns, with Hodgkin-Huxley kinetics, and dynamic sodium (declared using rxd but without any additional kinetics). | 
              
                    |  | 133 | +=== [[Segmenting a simulation of a model network - Introduction>>https://neuron.yale.edu/neuron/docs/segmenting-simulation-model-network||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    |  | 134 | + | 
              
                    |  | 135 | +**Level**: advanced(%%)  **Type**: user documentation | 
              
                    |  | 136 | + | 
              
                    |  | 137 | +=== [[Using the Network Builder – Tutorial 1: Making Networks of Artificial Neurons>>https://neuron.yale.edu/neuron/static/docs/netbuild/artnet/outline.html||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    |  | 138 | + | 
              
                    |  | 139 | +**Level**: advanced(%%)  **Type**: interactive tutorial | 
              
                    |  | 140 | + | 
              
                    |  | 141 | +Learn how to Artificial Integrate and Fire cell with a synapse that is driven by an afferent burst of spikes. | 
              
                    |  | 142 | +=== [[Reaction-Diffusion Example – Restricting a reaction to part of a region>>https://neuron.yale.edu/neuron/docs/example-restricting-reaction-part-region||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    |  | 143 | + | 
              
                    |  | 144 | +**Level**: advanced(%%)  **Type**: user documentation | 
              
                    |  | 145 | + | 
              
                    |  | 146 | +Implementation example for the restriction of the reaction to part of a region. | 
              
                    |  | 147 | +=== [[Segmenting a simulation of a model cell - Introduction>>https://neuron.yale.edu/neuron/docs/segmenting-simulation-model-cell||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    |  | 148 | + | 
              
                    |  | 149 | +**Level**: advanced(%%)  **Type**: user documentation | 
              
                    |  | 150 | + | 
              
                    |  | 151 | +=== [[Scripting NEURON basics>>https://neuron.yale.edu/neuron/docs/scripting-neuron-basics||rel=" noopener noreferrer" target="_blank"]] === | 
              
                    |  | 152 | + | 
              
                    |  | 153 | +**Level**: advanced(%%)  **Type**: user documentation | 
              
                    |  | 154 | + | 
              
                    |  | 155 | +The objectives of this part of the tutorial are to get familiar with basic operations of NEURON using Python. In this worksheet we will: Create a passive cell membrane in NEURON. Create a synaptic stimulus onto the neuron. Modify parameters of the membrane and stimulus. Visualize results with bokeh. | 
              
                    |  | 156 | + |