| ... | 
        ... | 
                @@ -192,4 +192,32 @@ | 
      
              
                    | 192 | 
          192 | 
            | 
        
              
                    | 193 | 
          193 | 
           **Level**: advanced(%%)  **Type**: user documentation | 
        
              
                    | 194 | 
          194 | 
            | 
        
              
                     | 
          195 | 
          +=== [[Using NEURON's Optimization Tools – Tutorial 2 : Fitting a model to data>>https://neuron.yale.edu/neuron/static/docs/optimiz/model/outline.html||rel=" noopener noreferrer" target="_blank"]] === | 
        
              
                    | 195 | 
          195 | 
            | 
        
              
                     | 
          197 | 
          +**Level**: advanced(%%)  **Type**: user documentation | 
        
              
                     | 
          198 | 
          + | 
        
              
                     | 
          199 | 
          +We will go over how to create an "unoptimized" model, set up a current clamp experiment on this model, configure a MultipleRunFitter to do a "run fitness" optimization, load the Experimental Data into the iclamp Run Fitness Generator, specify the parameters that will be adjusted and finally perform the optimization. | 
        
              
                     | 
          200 | 
          +=== [[Reaction-Diffusion – Hodgkin-Huxley using rxd>>https://neuron.yale.edu/neuron/docs/hodgkin-huxley-using-rxd||rel=" noopener noreferrer" target="_blank"]] === | 
        
              
                     | 
          201 | 
          + | 
        
              
                     | 
          202 | 
          +**Level**: advanced(%%)  **Type**: interactive tutorial | 
        
              
                     | 
          203 | 
          + | 
        
              
                     | 
          204 | 
          +In this tutorial you will learn how to set the proper parameters for the Hodgkin–Huxley model in NEURON. | 
        
              
                     | 
          205 | 
          +=== [[Using the CellBuilder – Creating a stylised ("stick-figure") model cell>>https://neuron.yale.edu/neuron/static/docs/cbtut/stylized/outline.html||rel=" noopener noreferrer" target="_blank"]] === | 
        
              
                     | 
          206 | 
          + | 
        
              
                     | 
          207 | 
          +**Level**: advanced(%%)  **Type**: - | 
        
              
                     | 
          208 | 
          + | 
        
              
                     | 
          209 | 
          +Learn how to build an extremely simplified model of a pyramidal cell. | 
        
              
                     | 
          210 | 
          +=== [[Ball and Stick model part 2>>https://neuron.yale.edu/neuron/docs/ball-and-stick-model-part-2||rel=" noopener noreferrer" target="_blank"]] === | 
        
              
                     | 
          211 | 
          + | 
        
              
                     | 
          212 | 
          +**Level**: advanced(%%)  **Type**: user documentation | 
        
              
                     | 
          213 | 
          + | 
        
              
                     | 
          214 | 
          +=== [[Reaction-Diffusion Example – Circadian rhythm>>https://neuron.yale.edu/neuron/docs/example-circadian-rhythm||rel=" noopener noreferrer" target="_blank"]] === | 
        
              
                     | 
          215 | 
          + | 
        
              
                     | 
          216 | 
          +**Level**: advanced(%%)  **Type**: user documentation | 
        
              
                     | 
          217 | 
          + | 
        
              
                     | 
          218 | 
          +Here we develop a NEURON implementation of the Leloup-Goldbeter model for circadian rhythms in Drosophila.  In this example NEURON's h library and its standard run system are being used as well as matplotlib to plot concentrations of circadian proteins over time. | 
        
              
                     | 
          219 | 
          +=== [[Segmenting a simulation of a model cell – 3. Run a segmented simulation and save its results>>https://neuron.yale.edu/neuron/docs/3-run-segmented-simulation-and-save-its-results||rel=" noopener noreferrer" target="_blank"]] === | 
        
              
                     | 
          220 | 
          + | 
        
              
                     | 
          221 | 
          +**Level**: advanced(%%)  **Type**: user documentation | 
        
              
                     | 
          222 | 
          + | 
        
              
                     | 
          223 | 
          + |