Changes for page Neuron

Last modified by abonard on 2025/04/10 15:17
From version 49.1
edited by abonard
on 2025/04/10 15:08
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To version 42.1
edited by abonard
on 2025/04/10 15:08
Change comment: There is no comment for this version

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207 207  **Level**: advanced(%%) **Type**: -
208 208  
209 209  Learn how to build an extremely simplified model of a pyramidal cell.
210 -=== [[Ball and Stick model part 2>>https://neuron.yale.edu/neuron/docs/ball-and-stick-model-part-2||rel=" noopener noreferrer" target="_blank"]] ===
211 211  
212 -**Level**: advanced(%%) **Type**: user documentation
213 -
214 -=== [[Reaction-Diffusion Example – Circadian rhythm>>https://neuron.yale.edu/neuron/docs/example-circadian-rhythm||rel=" noopener noreferrer" target="_blank"]] ===
215 -
216 -**Level**: advanced(%%) **Type**: user documentation
217 -
218 -Here we develop a NEURON implementation of the Leloup-Goldbeter model for circadian rhythms in Drosophila. In this example NEURON's h library and its standard run system are being used as well as matplotlib to plot concentrations of circadian proteins over time.
219 -=== [[Segmenting a simulation of a model cell – 3. Run a segmented simulation and save its results>>https://neuron.yale.edu/neuron/docs/3-run-segmented-simulation-and-save-its-results||rel=" noopener noreferrer" target="_blank"]] ===
220 -
221 -**Level**: advanced(%%) **Type**: user documentation
222 -
223 -=== [[ModelView: Compact display of parameters for NEURON models.>>https://neuron.yale.edu/neuron/static/papers/mview/modelviewhbp2004.html||rel=" noopener noreferrer" target="_blank"]] ===
224 -
225 -**Level**: advanced(%%) **Type**: user documentation
226 -
227 -This example demonstrates how ModelView can explore a NEURON model.
228 -=== [[Segmenting a simulation of a model network – 3. Run a segmented simulation and save its results>>https://neuron.yale.edu/neuron/docs/3-run-segmented-simulation-and-save-its-results-0||rel=" noopener noreferrer" target="_blank"]] ===
229 -
230 -**Level**: advanced(%%) **Type**: user documentation
231 -
232 -=== [[Segmenting a simulation of a model network – 4. Reconstitute and verify the "complete" simulation results>>https://neuron.yale.edu/neuron/docs/4-reconstitute-and-verify-complete-simulation-results-0||rel=" noopener noreferrer" target="_blank"]] ===
233 -
234 -**Level**: advanced(%%) **Type**: user documentation
235 -
236 -=== [[Using NEURON's Optimization Tools – Tutorial 1 : Fitting a function to data>>https://neuron.yale.edu/neuron/static/docs/optimiz/func/outline.html||rel=" noopener noreferrer" target="_blank"]] ===
237 -
238 -**Level**: advanced(%%) **Type**: user documentation
239 -
240 -We will look into how to bring up a Multiple Run Fitter, load the Experimental Data into the Multiple Run Fitter, specify the function we want to optimize, specify the parameters that will be adjusted, specify the criteria we want the function to satisfy and finally perform the optimization.
241 -