Changes for page Neuron

Last modified by abonard on 2025/04/10 15:17

From version 56.1
edited by abonard
on 2025/04/10 15:08
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To version 62.1
edited by abonard
on 2025/04/10 15:08
Change comment: There is no comment for this version

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272 272  **Level**: advanced(%%) **Type**: user documentation
273 273  
274 274  Import3D tool can be used to translate common varieties of cellular morphometric data into a CellBuilder that specifies the anatomical properties of a model neuron. This Tutorial will guide you through bringing up an Import3d tool, then specifying a file to be read and finally export the data as a NEURON model.
275 +=== [[Reaction-Diffusion – Varying initial concentrations and parameters>>https://neuron.yale.edu/neuron/docs/reaction-diffusion-varying-initial-concentrations-and-parameters||rel=" noopener noreferrer" target="_blank"]] ===
275 275  
277 +**Level**: advanced(%%) **Type**: interactive tutorial
278 +
279 +This tutorial will show you how to manipulate the rxd.Species attribute to see how the choice of initial conditions affects the dynamics.
280 +=== [[Using the CellBuilder – Managing a model cell with complex anatomy>>https://neuron.yale.edu/neuron/static/docs/cbtut/pt3d/outline.html||rel=" noopener noreferrer" target="_blank"]] ===
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282 +**Level**: advanced(%%) **Type**: interactive tutorial
283 +
284 +We use the CellBuilder to specify the spatial grid (nseg) and biophysical properties of a model based on detailed morphometric data.
285 +=== [[Using NEURON's Optimization Tools>>https://neuron.yale.edu/neuron/static/docs/optimiz/main.html||rel=" noopener noreferrer" target="_blank"]] ===
286 +
287 +**Level**: advanced(%%) **Type**: user documentation
288 +
289 +This collection of tutorials shows how to use NEURON's optimization tools. Before working through these tutorials, most readers should probably examine the on-line "Introduction to Optimization" http://neos-guide.org/content/optimization-introduction.
290 +=== [[Ball and Stick model part 1>>https://neuron.yale.edu/neuron/docs/ball-and-stick-model-part-1||rel=" noopener noreferrer" target="_blank"]] ===
291 +
292 +**Level**: advanced(%%) **Type**: user documentation
293 +
294 +=== [[Reaction-Diffusion – Extracellular Diffusion>>https://neuron.yale.edu/neuron/docs/extracellular-diffusion||rel=" noopener noreferrer" target="_blank"]] ===
295 +
296 +**Level**: advanced(%%) **Type**: interactive tutorial
297 +
298 +We have expanded the capabilities the NEURON reaction diffusion module to support a macroscopic model of the extracellular space. Here is brief a tutorial that provides an overview of the python interface.
299 +=== [[Segmenting a simulation of a model cell – 4. Reconstitute and verify the "complete" simulation results>>https://neuron.yale.edu/neuron/docs/4-reconstitute-and-verify-complete-simulation-results||rel=" noopener noreferrer" target="_blank"]] ===
300 +
301 +**Level**: advanced(%%) **Type**: user documentation
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303 +