Summary

• Page properties (1 modified, 0 added, 0 removed)

Details

Page properties

Content

...	...	@@ -2,6 +2,8 @@
2	2
3	3	* ((( ==== **[[Beginner >>||anchor = "HBeginner-1"]]** ==== )))
4	4
	5	+* ((( ==== **[[Advanced >>||anchor = "HAdvanced-1"]]** ==== )))
	6	+
5	5	=== **Beginner** ===
6	6
7	7	=== [[A NEURON Programming Tutorial - part C>>http://web.mit.edu/neuron_v7.4/nrntuthtml/tutorial/tutC.html||rel=" noopener noreferrer" target="_blank"]] ===
...	...	@@ -40,4 +40,36 @@
40	40	**Level**: beginner(%%) **Type**: interactive tutorial
41	41
42	42	In this beginner tutorial you will learn how to make a simple model using hoc and how to use NEURON's graphical tools to create an interface for running simulations and to modify the model itself.
	45	+=== [[The hoc programming language>>https://neuron.yale.edu/neuron/static/docs/programming/hoc_slides.pdf||rel=" noopener noreferrer" target="_blank"]] ===
43	43
	47	+**Level**: beginner(%%) **Type**: slide deck
	48	+
	49	+Slides from a presentation on hoc syntax. Clear and concise. Includes an example of program analysis (walkthrough of code for a model cell generated by the CellBuilder).
	50	+=== [[A NEURON Programming Tutorial - Part E>>http://web.mit.edu/neuron_v7.4/nrntuthtml/tutorial/tutE.html||rel=" noopener noreferrer" target="_blank"]] ===
	51	+
	52	+**Level**: beginner(%%) **Type**: user documentation
	53	+
	54	+After this tutorial, students will be able to save data from the simulations and methods for increasing simulation speed.
	55	+=== **Advanced** ===
	56	+
	57	+=== [[Reaction-Diffusion – Radial Diffusion>>https://neuron.yale.edu/neuron/docs/radial-diffusion||rel=" noopener noreferrer" target="_blank"]] ===
	58	+
	59	+**Level**: advanced(%%) **Type**: -
	60	+
	61	+Using NEURON Radial diffusion can be implemented in rxd using multicompartment reactions. By creating a series of shells and borders with reactions between them dependent the diffusion coefficient.
	62	+=== [[Reaction-Diffusion Example – Calcium Wave>>https://neuron.yale.edu/neuron/docs/reaction-diffusion-calcium-wave||rel=" noopener noreferrer" target="_blank"]] ===
	63	+
	64	+**Level**: advanced(%%) **Type**: interactive tutorial
	65	+
	66	+The model presented in this tutorial generates Ca2+ waves and is a simplification of the model we used in Neymotin et al., 2015.
	67	+=== [[Reaction-Diffusion – 3D/Hybrid Intracellular Tutorial>>https://neuron.yale.edu/neuron/docs/3dhybrid-intracellular-tutorial||rel=" noopener noreferrer" target="_blank"]] ===
	68	+
	69	+**Level**: advanced(%%) **Type**: interactive tutorial
	70	+
	71	+This tutorial provides an overview of how to set up a simple travelling wave in both cases.
	72	+=== [[Reaction-Diffusion – Initialization strategies>>https://neuron.yale.edu/neuron/docs/initialization-strategies||rel=" noopener noreferrer" target="_blank"]] ===
	73	+
	74	+**Level**: advanced(%%) **Type**: interactive tutorial
	75	+
	76	+In this tutorial you will learn how to implement cell signalling function in the reaction-diffusion system by characterising your problems by the answers to three questions: (1) Where do the dynamics occur, (2) Who are the actors, and (3) How do they interact?
	77	+