... |
... |
@@ -107,55 +107,4 @@ |
107 |
107 |
**Level**: advanced(%%) **Type**: interactive tutorial |
108 |
108 |
|
109 |
109 |
Our goal is to implement a new voltage-gated macroscopic current whose properties are described by HH-style equations. |
110 |
|
-=== [[Using the Channel Builder – Creating a channel from a kinetic scheme specification>>https://neuron.yale.edu/neuron/static/docs/chanlbild/kinetic/outline.html||rel=" noopener noreferrer" target="_blank"]] === |
111 |
111 |
|
112 |
|
-**Level**: advanced(%%) **Type**: interactive tutorial |
113 |
|
- |
114 |
|
-Here we will implement a new voltage-gated macroscopic current whose properties are described by a family of chemical reactions. |
115 |
|
-=== [[Randomness in NEURON models– Source code that demonstrates the solution>>https://neuron.yale.edu/neuron/docs/source-code-demonstrates-solution||rel=" noopener noreferrer" target="_blank"]] === |
116 |
|
- |
117 |
|
-**Level**: advanced(%%) **Type**: user documentation |
118 |
|
- |
119 |
|
-=== [[Using the Network Builder – Introduction to Network Construction>>https://neuron.yale.edu/neuron/static/docs/netbuild/intro.html||rel=" noopener noreferrer" target="_blank"]] === |
120 |
|
- |
121 |
|
-**Level**: advanced(%%) **Type**: user documentation |
122 |
|
- |
123 |
|
-=== [[Python introduction>>https://neuron.yale.edu/neuron/docs/python-introduction||rel=" noopener noreferrer" target="_blank"]] === |
124 |
|
- |
125 |
|
-**Level**: advanced(%%) **Type**: user documentation |
126 |
|
- |
127 |
|
-This page provides a brief introduction to Python syntax, Variables, Lists and Dicts, For loops and iterators, Functions, Classes, Importing modules, Writing and reading files with Pickling. |
128 |
|
-=== [[Reaction-Diffusion Example – RxD with MOD files>>https://neuron.yale.edu/neuron/docs/rxd-mod-files||rel=" noopener noreferrer" target="_blank"]] === |
129 |
|
- |
130 |
|
-**Level**: advanced(%%) **Type**: user documentation |
131 |
|
- |
132 |
|
-NEURON's reaction-diffusion infrastructure can be used to readily allow intracellular concentrations to respond to currents generated in MOD files. This example shows you a simple model with just a single point soma, of length and diameter 10 microns, with Hodgkin-Huxley kinetics, and dynamic sodium (declared using rxd but without any additional kinetics). |
133 |
|
-=== [[Segmenting a simulation of a model network - Introduction>>https://neuron.yale.edu/neuron/docs/segmenting-simulation-model-network||rel=" noopener noreferrer" target="_blank"]] === |
134 |
|
- |
135 |
|
-**Level**: advanced(%%) **Type**: user documentation |
136 |
|
- |
137 |
|
-=== [[Using the Network Builder – Tutorial 1: Making Networks of Artificial Neurons>>https://neuron.yale.edu/neuron/static/docs/netbuild/artnet/outline.html||rel=" noopener noreferrer" target="_blank"]] === |
138 |
|
- |
139 |
|
-**Level**: advanced(%%) **Type**: interactive tutorial |
140 |
|
- |
141 |
|
-Learn how to Artificial Integrate and Fire cell with a synapse that is driven by an afferent burst of spikes. |
142 |
|
-=== [[Reaction-Diffusion Example – Restricting a reaction to part of a region>>https://neuron.yale.edu/neuron/docs/example-restricting-reaction-part-region||rel=" noopener noreferrer" target="_blank"]] === |
143 |
|
- |
144 |
|
-**Level**: advanced(%%) **Type**: user documentation |
145 |
|
- |
146 |
|
-Implementation example for the restriction of the reaction to part of a region. |
147 |
|
-=== [[Segmenting a simulation of a model cell - Introduction>>https://neuron.yale.edu/neuron/docs/segmenting-simulation-model-cell||rel=" noopener noreferrer" target="_blank"]] === |
148 |
|
- |
149 |
|
-**Level**: advanced(%%) **Type**: user documentation |
150 |
|
- |
151 |
|
-=== [[Scripting NEURON basics>>https://neuron.yale.edu/neuron/docs/scripting-neuron-basics||rel=" noopener noreferrer" target="_blank"]] === |
152 |
|
- |
153 |
|
-**Level**: advanced(%%) **Type**: user documentation |
154 |
|
- |
155 |
|
-The objectives of this part of the tutorial are to get familiar with basic operations of NEURON using Python. In this worksheet we will: Create a passive cell membrane in NEURON. Create a synaptic stimulus onto the neuron. Modify parameters of the membrane and stimulus. Visualize results with bokeh. |
156 |
|
-=== [[Reaction-Diffusion – Thresholds>>https://neuron.yale.edu/neuron/docs/reaction-diffusion-thresholds||rel=" noopener noreferrer" target="_blank"]] === |
157 |
|
- |
158 |
|
-**Level**: advanced(%%) **Type**: interactive tutorial |
159 |
|
- |
160 |
|
-Learn how to scale reaction rates by a function of the form f(x) for suitably chosen a and m to approximately threshold them by a concentration. |
161 |
|
- |