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3.1 | 3 | * ((( ==== **[[Beginner >>||anchor = "HBeginner-1"]]** ==== ))) |
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2.1 | 4 | |
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136.1 | 5 | * ((( ==== **[[Advanced >>||anchor = "HAdvanced-1"]]** ==== ))) |
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3.1 | 7 | === **Beginner** === |
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2.1 | 8 | |
| 9 | === [[A NEURON Programming Tutorial - part C>>http://web.mit.edu/neuron_v7.4/nrntuthtml/tutorial/tutC.html||rel=" noopener noreferrer" target="_blank"]] === | ||
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3.1 | 11 | **Level**: beginner(%%) **Type**: user documentation |
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2.1 | 12 | |
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3.1 | 13 | After this tutorial, students will be able to replicate neurons using templates and connect these neurons together. |
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128.1 | 14 | === [[A NEURON Programming Tutorial - Part A>>http://web.mit.edu/neuron_v7.4/nrntuthtml/tutorial/tutA.html||rel=" noopener noreferrer" target="_blank"]] === |
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2.1 | 15 | |
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128.1 | 16 | **Level**: beginner(%%) **Type**: user documentation |
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| 18 | After this tutorial, students will be able to know how to create a single compartment neuron model with Hodgkin-Huxley conductances, how to run the simulator and how to display the simulation results | ||
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129.1 | 19 | === [[A NEURON Programming Tutorial - Part B>>http://web.mit.edu/neuron_v7.4/nrntuthtml/tutorial/tutB.html||rel=" noopener noreferrer" target="_blank"]] === |
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128.1 | 20 | |
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129.1 | 21 | **Level**: beginner(%%) **Type**: user documentation |
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| 23 | After this tutorial, students will be able to work with more advanced topics of building multi-compartmental neurons and using different types of graphs to display the results | ||
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130.1 | 24 | === [[A NEURON Programming Tutorial - Part D>>http://web.mit.edu/neuron_v7.4/nrntuthtml/tutorial/tutE.html||rel=" noopener noreferrer" target="_blank"]] === |
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129.1 | 25 | |
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130.1 | 26 | **Level**: beginner(%%) **Type**: user documentation |
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| 28 | After this tutorial, students will be able to add new membrane mechanisms to the simulator and incorporate them in our neurons. | ||
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131.1 | 29 | === [[Construction and Use of Models: Part 1. Elementary tools>>https://neuron.yale.edu/neuron/static/docs/elementarytools/outline.htm||rel=" noopener noreferrer" target="_blank"]] === |
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130.1 | 30 | |
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131.1 | 31 | **Level**: beginner(%%) **Type**: user documentation |
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| 33 | A good beginner's tutorial to get an introduction to some of NEURON's basic GUI tools. | ||
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132.1 | 34 | === [[A NEURON Programming Tutorial - Introduction>>https://web.mit.edu/neuron_v7.4/nrntuthtml/index.html||rel=" noopener noreferrer" target="_blank"]] === |
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131.1 | 35 | |
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132.1 | 36 | **Level**: beginner(%%) **Type**: user documentation |
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| 38 | This is a web based tutorial in the NEURON Simulation package. It will hopefully take you step by step, through the process of creating a complex simulation of a small network of neurons. | ||
| 39 | Starting by creating a single compartment neuron model with Hodgkin-Huxley conductances, how to run the simulator and how to display the simulation results, building multi-compartmental neurons, using different types of graphs to display the results, how to replicate neurons using templates, add new membrane mechanisms to the simulator and incorporate them into our neurons, increasing simulation speed and ways of getting data out of NEURON. | ||
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133.1 | 40 | === [[Outline of "Construction and Use of Models: Part 1. Elementary tools">>https://neuron.yale.edu/neuron/static/docs/elementarytools/outline.htm||rel=" noopener noreferrer" target="_blank"]] === |
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132.1 | 41 | |
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133.1 | 42 | **Level**: beginner(%%) **Type**: interactive tutorial |
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| 44 | In this beginner tutorial you will learn how to make a simple model using hoc and how to use NEURON's graphical tools to create an interface for running simulations and to modify the model itself. | ||
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134.1 | 45 | === [[The hoc programming language>>https://neuron.yale.edu/neuron/static/docs/programming/hoc_slides.pdf||rel=" noopener noreferrer" target="_blank"]] === |
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133.1 | 46 | |
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134.1 | 47 | **Level**: beginner(%%) **Type**: slide deck |
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| 49 | Slides from a presentation on hoc syntax. Clear and concise. Includes an example of program analysis (walkthrough of code for a model cell generated by the CellBuilder). | ||
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135.1 | 50 | === [[A NEURON Programming Tutorial - Part E>>http://web.mit.edu/neuron_v7.4/nrntuthtml/tutorial/tutE.html||rel=" noopener noreferrer" target="_blank"]] === |
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134.1 | 51 | |
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135.1 | 52 | **Level**: beginner(%%) **Type**: user documentation |
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| 54 | After this tutorial, students will be able to save data from the simulations and methods for increasing simulation speed. | ||
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136.1 | 55 | === **Advanced** === |
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135.1 | 56 | |
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136.1 | 57 | === [[Reaction-Diffusion – Radial Diffusion>>https://neuron.yale.edu/neuron/docs/radial-diffusion||rel=" noopener noreferrer" target="_blank"]] === |
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| 59 | **Level**: advanced(%%) **Type**: - | ||
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| 61 | Using NEURON Radial diffusion can be implemented in rxd using multicompartment reactions. By creating a series of shells and borders with reactions between them dependent the diffusion coefficient. | ||
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