Attention: The Collaboratory IAM will down for up to 1 hour on Monday, the 7th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour. Any and all services, which require a user login with an EBRAINS account, will be un-available during that time


QuickNII

Last modified by abonard on 2025/06/13 16:11

Beginner

QUINT Workflow – Atlas-based quantification and spatial analysis

Level: beginner  Type: video tutorial

QUINT workflow video tutorial

Level: beginner  Type: video tutorial

After attending this tutorial, learners will know how to use the QUINT workflow to quantify and analyse labelled features in a series of histological images of rodent brain sections within a known atlas space.  They will be able to use the QuickNII and VisuAlign software are used for precise image registration, and the ilastik software for efficient identification of labelled objects. Finally, learners will know to use the Nutil tool to quantify features per atlas region.

Advanced

EBRAINS Atlases - QUINT workflow Tutorial

Level: advanced  Type: video tutorial