Changes for page QuickNII

Last modified by abonard on 2025/04/10 15:17
From version 1.1
edited by jessicamitchell
on 2023/09/11 11:44
Change comment: There is no comment for this version
To version 7.1
edited by abonard
on 2025/04/10 15:17
Change comment: There is no comment for this version

Summary

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Author
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1 -XWiki.jessicamitchell
1 +XWiki.abonard
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1 -Available tutorials:
2 2  
2 +
3 +* ((( ==== **[[Beginner >>||anchor = "HBeginner-1"]]** ==== )))
4 +
5 +* ((( ==== **[[Advanced >>||anchor = "HAdvanced-1"]]** ==== )))
6 +
7 +=== **Beginner** ===
8 +
9 +=== [[QUINT Workflow – Atlas-based quantification and spatial analysis>>https://www.youtube.com/watch?v=n-gQigcGMJ0||rel=" noopener noreferrer" target="_blank"]] ===
10 +
11 +**Level**: beginner(%%) **Type**: video tutorial
12 +
13 +{{html}}
14 +<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/n-gQigcGMJ0" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
15 +{{/html}}
3 3  === [[QUINT workflow video tutorial>>https://www.youtube.com/watch?v=n-gQigcGMJ0||rel=" noopener noreferrer" target="_blank"]] ===
4 4  
5 -//Level: beginner//
18 +**Level**: beginner(%%) **Type**: video tutorial
6 6  
20 +After attending this tutorial, learners will know how to use the QUINT workflow to quantify and analyse labelled features in a series of histological images of rodent brain sections within a known atlas space. They will be able to use the QuickNII and VisuAlign software are used for precise image registration, and the ilastik software for efficient identification of labelled objects. Finally, learners will know to use the Nutil tool to quantify features per atlas region.
21 +{{html}}
22 +<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/n-gQigcGMJ0" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
23 +{{/html}}
24 +=== **Advanced** ===
25 +
7 7  === [[EBRAINS Atlases - QUINT workflow Tutorial>>https://youtu.be/n-gQigcGMJ0||rel=" noopener noreferrer" target="_blank"]] ===
8 8  
9 -//Level: advanced//
28 +**Level**: advanced(%%) **Type**: video tutorial
10 10  
11 11  {{html}}
12 12  <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/n-gQigcGMJ0" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>