Warning : The Lab instance on CINECA will be unavailable today from 16:00 CEST (my timezone) for up to 15 minutes for maintenance. The JSC instance will remain operational during this period.


Changes for page The Virtual Brain

Last modified by abonard on 2025/06/13 16:12

From version 107.1
edited by abonard
on 2025/06/13 16:12
Change comment: There is no comment for this version
To version 16.1
edited by abonard
on 2025/04/10 15:09
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -72,4 +72,41 @@
72 72  {{html}}
73 73  <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/PppyGzWUxuE" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
74 74  {{/html}}
75 +=== [[Scripting tutorials – Modeling Epilepsy>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s6_ModelingEpilepsy.ipynb||rel=" noopener noreferrer" target="_blank"]] ===
75 75  
77 +**Level**: advanced(%%) **Type**: interactive tutorial
78 +
79 +In this tutorial we will be exploring the epileptor model, look into region based simulation of a temporal lobe seizure and start modeling surgical resection, and triggering a seizure by stimulation.
80 +=== [[Hands-On: Modeling stroke brain>>https://youtu.be/BDj9MLpt0io||rel=" noopener noreferrer" target="_blank"]] ===
81 +
82 +**Level**: advanced(%%) **Type**: video tutorial
83 +
84 +Paul Triebkorn will guide you through manipulation of the connectomes, parameter space exploration and functional connectivity analysis.
85 +{{html}}
86 +<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/BDj9MLpt0io" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
87 +{{/html}}
88 +=== [[Modeling brain dynamics in brain tumor patients using The Virtual Brain>>https://youtu.be/t9xyoHxTAmQ||rel=" noopener noreferrer" target="_blank"]] ===
89 +
90 +**Level**: advanced(%%) **Type**: video tutorial
91 +
92 +Tutorial on how to simulate brain tumor brains with TVB (reproducing publication: Marinazzo et al. 2020 Neuroimage).
93 +{{html}}
94 +<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/t9xyoHxTAmQ" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
95 +{{/html}}
96 +=== [[Import Virtual Brain ready data into TVB and create a brain model>>https://youtu.be/OEOCFyiJgBM||rel=" noopener noreferrer" target="_blank"]] ===
97 +
98 +**Level**: advanced(%%) **Type**: video tutorial
99 +
100 +Patrik Bey covers in this lesson how to import Virtual Brain ready data into TVB and how to create brain models in TVB.
101 +{{html}}
102 +<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/OEOCFyiJgBM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
103 +{{/html}}
104 +=== [[TVB Clinical Applications - Stroke Recovery & Dementia>>https://youtu.be/ZA2UuHZiPnM||rel=" noopener noreferrer" target="_blank"]] ===
105 +
106 +**Level**: advanced(%%) **Type**: video tutorial
107 +
108 +Randy McIntosh in this tutorial first gives a general introduction to stroke and later covers topics on the TVB simulation workflow for stroke patients, structural reconstruction: “Virtual Brain Transplant”, parameter space exploration and fitting, general introduction to dementia, the TVB simulation workflow for patients with dementia, pre-processing issues related to atrophy, two-stage modeling: sub- and full-brain network model and cognition predictor: model parameters vs. metrics of neuroimaging data.
109 +{{html}}
110 +<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/ZA2UuHZiPnM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
111 +{{/html}}
112 +