Changes for page The Virtual Brain
Last modified by abonard on 2025/06/03 11:07
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... ... @@ -109,4 +109,73 @@ 109 109 {{html}} 110 110 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/ZA2UuHZiPnM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe> 111 111 {{/html}} 112 +=== [[Scripting tutorials – Evoked Responses in the Visual Cortex>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s4_EvokedResponsesInTheVisualCortex.ipynb||rel=" noopener noreferrer" target="_blank"]] === 112 112 114 +**Level**: advanced(%%) **Type**: interactive tutorial 115 + 116 +We will show you how to set up a connectivity and its attributes, set up a model, choose an integration scheme (noise or not?), build a stimulus, create a simulator instance and finally how to create a run function to perform the simulation. 117 +=== [[Scripting tutorials – Region simulation tutorial>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s1_region_simulation.ipynb||rel=" noopener noreferrer" target="_blank"]] === 118 + 119 +**Level**: advanced(%%) **Type**: interactive tutorial 120 + 121 +Here you will learn how to use a script implementing the basic region imulation. 122 +=== [[Simulating The Virtual Mouse Brain (TVMB)>>https://youtu.be/gxhJku8KRYY||rel=" noopener noreferrer" target="_blank"]] === 123 + 124 +**Level**: advanced(%%) **Type**: video tutorial 125 + 126 +Step-by-step guide to simulating The Virtual Mouse Brain. 127 +{{html}} 128 +<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/gxhJku8KRYY" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe> 129 +{{/html}} 130 +=== [[Surface-based simulations and deep brain stimulations>>https://youtu.be/ZXLrvHc24xE||rel=" noopener noreferrer" target="_blank"]] === 131 + 132 +**Level**: advanced(%%) **Type**: video tutorial 133 + 134 +Jil Meier covers in this tutorial surface-based simulations as well as deep brain simulations answering what they are, when to use them and how? 135 +{{html}} 136 +<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/ZXLrvHc24xE" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe> 137 +{{/html}} 138 +=== [[Human Brain Project (HBP) TVB-NEST co-simulation>>https://youtu.be/dUuQe_SI5lE||rel=" noopener noreferrer" target="_blank"]] === 139 + 140 +**Level**: advanced(%%) **Type**: video tutorial 141 + 142 +Learn how to use the TVB-NEST toolbox co-simulation in the HBP collab. 143 +{{html}} 144 +<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/dUuQe_SI5lE" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe> 145 +{{/html}} 146 +=== [[Scripting tutorials – Surface simulation tutorial>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s2_surface_simulation.ipynb||rel=" noopener noreferrer" target="_blank"]] === 147 + 148 +**Level**: advanced(%%) **Type**: interactive tutorial 149 + 150 +In addition to the components discussed for a region simulation here we introduce one new major component, that is: 151 + 152 +Cortex, the primary component of which is a mesh surface defining a 2d representation of the convoluted cortical surface embedded in 3d space. This object includes a range of ancillary information and methods required for using it in simulations. 153 + 154 +We will also introduce two new Monitors that make more sense in the context of surface simulations 155 +=== [[Scripting tutorials – Exploring a neural mass model>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s3_exploring_a_model.ipynb||rel=" noopener noreferrer" target="_blank"]] === 156 + 157 +**Level**: advanced(%%) **Type**: interactive tutorial 158 + 159 +In this tutorial we will look into creating an interactive phase-plane, specifying stochastic integration and finally learn how to simulate and visualise these models. 160 +=== [[Scripting tutorials – Resting State Networks>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s5_ModelingRestingStateNetworks.ipynb||rel=" noopener noreferrer" target="_blank"]] === 161 + 162 +**Level**: advanced(%%) **Type**: interactive tutorial 163 + 164 +We will demonstrate some starting points for modeling resting state networks in TVB, using the default data set. 165 +=== [[Brain stimulation in The Virtual Brain>>https://youtu.be/mskxBYKoeq0||rel=" noopener noreferrer" target="_blank"]] === 166 + 167 +**Level**: advanced(%%) **Type**: video tutorial 168 + 169 +Topics covered in this lesson by Andreas Spiegler: 170 +Introduction to stimulation paradigm and stimulation techniques 171 +How to model brain stimulation with TVB 172 +Region-based stimulus 173 +Surface-based stimulus 174 +Examples of stimulated network dynamics using 175 +Human brain model 176 +Mouse brain model 177 +Example of Transcranial Direct-Current Stimulation (tDCS) 178 +{{html}} 179 +<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/mskxBYKoeq0" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe> 180 +{{/html}} 181 +