Changes for page The Virtual Brain
Last modified by abonard on 2025/06/03 11:07
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... ... @@ -101,65 +101,4 @@ 101 101 {{html}} 102 102 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/OEOCFyiJgBM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe> 103 103 {{/html}} 104 -=== [[TVB Clinical Applications - Stroke Recovery & Dementia>>https://youtu.be/ZA2UuHZiPnM||rel=" noopener noreferrer" target="_blank"]] === 105 105 106 -**Level**: advanced(%%) **Type**: video tutorial 107 - 108 -Randy McIntosh in this tutorial first gives a general introduction to stroke and later covers topics on the TVB simulation workflow for stroke patients, structural reconstruction: “Virtual Brain Transplant”, parameter space exploration and fitting, general introduction to dementia, the TVB simulation workflow for patients with dementia, pre-processing issues related to atrophy, two-stage modeling: sub- and full-brain network model and cognition predictor: model parameters vs. metrics of neuroimaging data. 109 -{{html}} 110 -<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/ZA2UuHZiPnM" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe> 111 -{{/html}} 112 -=== [[Scripting tutorials – Evoked Responses in the Visual Cortex>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s4_EvokedResponsesInTheVisualCortex.ipynb||rel=" noopener noreferrer" target="_blank"]] === 113 - 114 -**Level**: advanced(%%) **Type**: interactive tutorial 115 - 116 -We will show you how to set up a connectivity and its attributes, set up a model, choose an integration scheme (noise or not?), build a stimulus, create a simulator instance and finally how to create a run function to perform the simulation. 117 -=== [[Scripting tutorials – Region simulation tutorial>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s1_region_simulation.ipynb||rel=" noopener noreferrer" target="_blank"]] === 118 - 119 -**Level**: advanced(%%) **Type**: interactive tutorial 120 - 121 -Here you will learn how to use a script implementing the basic region imulation. 122 -=== [[Simulating The Virtual Mouse Brain (TVMB)>>https://youtu.be/gxhJku8KRYY||rel=" noopener noreferrer" target="_blank"]] === 123 - 124 -**Level**: advanced(%%) **Type**: video tutorial 125 - 126 -Step-by-step guide to simulating The Virtual Mouse Brain. 127 -{{html}} 128 -<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/gxhJku8KRYY" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe> 129 -{{/html}} 130 -=== [[Surface-based simulations and deep brain stimulations>>https://youtu.be/ZXLrvHc24xE||rel=" noopener noreferrer" target="_blank"]] === 131 - 132 -**Level**: advanced(%%) **Type**: video tutorial 133 - 134 -Jil Meier covers in this tutorial surface-based simulations as well as deep brain simulations answering what they are, when to use them and how? 135 -{{html}} 136 -<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/ZXLrvHc24xE" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe> 137 -{{/html}} 138 -=== [[Human Brain Project (HBP) TVB-NEST co-simulation>>https://youtu.be/dUuQe_SI5lE||rel=" noopener noreferrer" target="_blank"]] === 139 - 140 -**Level**: advanced(%%) **Type**: video tutorial 141 - 142 -Learn how to use the TVB-NEST toolbox co-simulation in the HBP collab. 143 -{{html}} 144 -<iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/dUuQe_SI5lE" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe> 145 -{{/html}} 146 -=== [[Scripting tutorials – Surface simulation tutorial>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s2_surface_simulation.ipynb||rel=" noopener noreferrer" target="_blank"]] === 147 - 148 -**Level**: advanced(%%) **Type**: interactive tutorial 149 - 150 -In addition to the components discussed for a region simulation here we introduce one new major component, that is: 151 - 152 -Cortex, the primary component of which is a mesh surface defining a 2d representation of the convoluted cortical surface embedded in 3d space. This object includes a range of ancillary information and methods required for using it in simulations. 153 - 154 -We will also introduce two new Monitors that make more sense in the context of surface simulations 155 -=== [[Scripting tutorials – Exploring a neural mass model>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s3_exploring_a_model.ipynb||rel=" noopener noreferrer" target="_blank"]] === 156 - 157 -**Level**: advanced(%%) **Type**: interactive tutorial 158 - 159 -In this tutorial we will look into creating an interactive phase-plane, specifying stochastic integration and finally learn how to simulate and visualise these models. 160 -=== [[Scripting tutorials – Resting State Networks>>https://nbviewer.thevirtualbrain.org/url/docs.thevirtualbrain.org/tutorials/tutorial_s5_ModelingRestingStateNetworks.ipynb||rel=" noopener noreferrer" target="_blank"]] === 161 - 162 -**Level**: advanced(%%) **Type**: interactive tutorial 163 - 164 -We will demonstrate some starting points for modeling resting state networks in TVB, using the default data set. 165 -