Beginner
QUINT Workflow – Atlas-based quantification and spatial analysis
Level: beginner Type: video tutorial
Advanced
Object Classification
Level: advanced Type: video tutorial
Learn how to use the object classification workflow to classify full objects, based on object-level features and user annotations.
Pixel Classification workflow
Level: advanced Type: video tutorial
This demonstration guides you through the Pixel Classification workflow by showing you how to assign labels to pixels based on pixel features and user annotations. Showing you how to select features of generic pixel features, smoothed pixel intensity, edge filters and texture descriptors.
EBRAINS Atlases - QUINT workflow Tutorial
Level: advanced Type: video tutorial
Tracking workflow
Level: advanced Type: video tutorial
This demo will guide you through the different types of tracking workflows in ilastik.
Carving Workflow
Level: advanced Type: video tutorial
In this demo we want to briefly show you how you can use the carving module to aid you in the extraction of objects from images that are only separable by their boundary - i.e. objects that do not differ from the rest of the image by their internal appearance.
Cell Density Counting Workflow
Level: advanced Type: video tutorial
In this workflow we will look into how to add dots for the object instances, brush strokes over the background
and add boxes to monitor the count in sub-image regions.
Tracking MaMuT Export
Level: advanced Type: video tutorial
This short video demonstrates how to export ilastik tracking results for visualization/proofreading to MaMuT.
Boundary-based segmentation with Multicut
Level: advanced Type: video tutorial
This tutorial will guide you through the boundary-based segmentation with Multicut.