Wiki source code of ilastik

Version 19.1 by abonard on 2025/04/10 15:14
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adavison 1.1 1
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abonard 3.1 3 * ((( ==== **[[Beginner >>||anchor = "HBeginner-1"]]** ==== )))
jessicamitchell 2.1 4
abonard 13.1 5 * ((( ==== **[[Advanced >>||anchor = "HAdvanced-1"]]** ==== )))
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abonard 3.1 7 === **Beginner** ===
jessicamitchell 2.1 8
abonard 3.1 9 === [[QUINT Workflow – Atlas-based quantification and spatial analysis>>https://www.youtube.com/watch?v=n-gQigcGMJ0||rel=" noopener noreferrer" target="_blank"]] ===
jessicamitchell 2.1 10
abonard 3.1 11 **Level**: beginner(%%) **Type**: video tutorial
jessicamitchell 2.1 12
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14 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/n-gQigcGMJ0" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 13.1 16 === **Advanced** ===
jessicamitchell 2.1 17
abonard 13.1 18 === [[Object Classification>>https://youtu.be/SQeRGvHeT3o||rel=" noopener noreferrer" target="_blank"]] ===
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20 **Level**: advanced(%%) **Type**: video tutorial
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22 Learn how to use the object classification workflow to classify full objects, based on object-level features and user annotations.
23 {{html}}
24 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/SQeRGvHeT3o" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 14.1 26 === [[Pixel Classification workflow>>https://youtu.be/5N0XYW9gRZY||rel=" noopener noreferrer" target="_blank"]] ===
abonard 13.1 27
abonard 14.1 28 **Level**: advanced(%%) **Type**: video tutorial
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30 This demonstration guides you through the Pixel Classification workflow by showing you how to assign labels to pixels based on pixel features and user annotations. Showing you how to select features of generic pixel features, smoothed pixel intensity, edge filters and texture descriptors.
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32 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/5N0XYW9gRZY" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 15.1 34 === [[EBRAINS Atlases - QUINT workflow Tutorial>>https://youtu.be/n-gQigcGMJ0||rel=" noopener noreferrer" target="_blank"]] ===
abonard 14.1 35
abonard 15.1 36 **Level**: advanced(%%) **Type**: video tutorial
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38 {{html}}
39 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/n-gQigcGMJ0" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 16.1 41 === [[Tracking workflow>>https://youtu.be/bZoWx2FuT08||rel=" noopener noreferrer" target="_blank"]] ===
abonard 15.1 42
abonard 16.1 43 **Level**: advanced(%%) **Type**: video tutorial
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45 This demo will guide you through the different types of tracking workflows in ilastik.
46 {{html}}
47 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/bZoWx2FuT08" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 17.1 49 === [[Carving Workflow>>https://youtu.be/xGyTriPQXHI||rel=" noopener noreferrer" target="_blank"]] ===
abonard 16.1 50
abonard 17.1 51 **Level**: advanced(%%) **Type**: video tutorial
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53 In this demo we want to briefly show you how you can use the carving module to aid you in the extraction of objects from images that are only separable by their boundary - i.e. objects that do not differ from the rest of the image by their internal appearance.
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55 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/xGyTriPQXHI" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 18.1 57 === [[Cell Density Counting Workflow>>https://youtu.be/N-QhiTWVDmk||rel=" noopener noreferrer" target="_blank"]] ===
abonard 17.1 58
abonard 18.1 59 **Level**: advanced(%%) **Type**: video tutorial
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61 In this workflow we will look into how to add dots for the object instances, brush strokes over the background
62 and add boxes to monitor the count in sub-image regions.
63 {{html}}
64 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/N-QhiTWVDmk" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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abonard 19.1 66 === [[Tracking MaMuT Export>>https://youtu.be/kjVqWSSdDmU||rel=" noopener noreferrer" target="_blank"]] ===
abonard 18.1 67
abonard 19.1 68 **Level**: advanced(%%) **Type**: video tutorial
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70 This short video demonstrates how to export ilastik tracking results for visualization/proofreading to MaMuT.
71 {{html}}
72 <iframe width="560" height="315" src="https://www.youtube-nocookie.com/embed/kjVqWSSdDmU" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen></iframe>
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